Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
PDGFBP01127 AC090877.2-201ENST00000558441 1738 ntBASIC23.74■■□□□ 1.39
PDGFBP01127 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC23.74■■□□□ 1.39
PDGFBP01127 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.74■■□□□ 1.39
PDGFBP01127 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC23.74■■□□□ 1.39
PDGFBP01127 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.74■■□□□ 1.39
PDGFBP01127 AP004609.3-201ENST00000610705 1884 ntBASIC23.74■■□□□ 1.39
PDGFBP01127 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PDGFBP01127 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
PDGFBP01127 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
PDGFBP01127 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC23.73■■□□□ 1.39
PDGFBP01127 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
PDGFBP01127 AC004911.1-201ENST00000416316 871 ntBASIC23.73■■□□□ 1.39
PDGFBP01127 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.73■■□□□ 1.39
PDGFBP01127 AC099791.2-201ENST00000605725 427 ntBASIC23.73■■□□□ 1.39
PDGFBP01127 AC092171.4-201ENST00000609130 632 ntBASIC23.73■■□□□ 1.39
PDGFBP01127 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.73■■□□□ 1.39
PDGFBP01127 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.73■■□□□ 1.39
PDGFBP01127 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
PDGFBP01127 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PDGFBP01127 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
PDGFBP01127 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC23.72■■□□□ 1.39
PDGFBP01127 SLC47A1P1-202ENST00000449666 945 ntBASIC23.72■■□□□ 1.39
PDGFBP01127 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PDGFBP01127 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
PDGFBP01127 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PDGFBP01127 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
PDGFBP01127 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
PDGFBP01127 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PDGFBP01127 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PDGFBP01127 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.71■■□□□ 1.39
PDGFBP01127 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC23.71■■□□□ 1.39
PDGFBP01127 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC23.71■■□□□ 1.39
PDGFBP01127 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PDGFBP01127 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PDGFBP01127 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
PDGFBP01127 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PDGFBP01127 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC23.7■■□□□ 1.38
PDGFBP01127 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC23.7■■□□□ 1.38
PDGFBP01127 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PDGFBP01127 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.69■■□□□ 1.38
PDGFBP01127 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PDGFBP01127 DLX3-202ENST00000512495 834 ntTSL 2 BASIC23.69■■□□□ 1.38
PDGFBP01127 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC23.69■■□□□ 1.38
PDGFBP01127 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PDGFBP01127 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC23.69■■□□□ 1.38
PDGFBP01127 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC23.69■■□□□ 1.38
PDGFBP01127 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC23.69■■□□□ 1.38
PDGFBP01127 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
PDGFBP01127 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PDGFBP01127 AC011298.3-201ENST00000615796 283 ntBASIC23.69■■□□□ 1.38
PDGFBP01127 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.68■■□□□ 1.38
PDGFBP01127 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.68■■□□□ 1.38
PDGFBP01127 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PDGFBP01127 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC23.68■■□□□ 1.38
PDGFBP01127 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.68■■□□□ 1.38
PDGFBP01127 AC005703.6-201ENST00000623265 1329 ntBASIC23.67■■□□□ 1.38
PDGFBP01127 AK1-201ENST00000223836 736 ntTSL 3 BASIC23.67■■□□□ 1.38
PDGFBP01127 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.67■■□□□ 1.38
PDGFBP01127 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PDGFBP01127 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PDGFBP01127 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PDGFBP01127 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PDGFBP01127 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC23.66■■□□□ 1.38
PDGFBP01127 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PDGFBP01127 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.65■■□□□ 1.38
PDGFBP01127 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.65■■□□□ 1.38
PDGFBP01127 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.65■■□□□ 1.38
PDGFBP01127 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
PDGFBP01127 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PDGFBP01127 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC23.65■■□□□ 1.38
PDGFBP01127 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PDGFBP01127 DUX4L2-201ENST00000561772 1275 ntBASIC23.65■■□□□ 1.38
PDGFBP01127 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC23.65■■□□□ 1.38
PDGFBP01127 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC23.65■■□□□ 1.38
PDGFBP01127 DUX4L6-201ENST00000626483 1275 ntBASIC23.65■■□□□ 1.38
PDGFBP01127 DUX4L1-201ENST00000627662 1275 ntBASIC23.65■■□□□ 1.38
PDGFBP01127 DUX4L8-201ENST00000629013 1275 ntBASIC23.65■■□□□ 1.38
PDGFBP01127 DUX4L3-201ENST00000630187 1275 ntBASIC23.65■■□□□ 1.38
PDGFBP01127 DUX4L7-201ENST00000630678 1275 ntBASIC23.65■■□□□ 1.38
PDGFBP01127 DUX4L5-201ENST00000630834 1275 ntBASIC23.65■■□□□ 1.38
PDGFBP01127 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
PDGFBP01127 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PDGFBP01127 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
PDGFBP01127 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
PDGFBP01127 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
PDGFBP01127 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC23.64■■□□□ 1.37
PDGFBP01127 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC23.64■■□□□ 1.37
PDGFBP01127 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC23.64■■□□□ 1.37
PDGFBP01127 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
PDGFBP01127 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC23.64■■□□□ 1.37
PDGFBP01127 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
PDGFBP01127 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PDGFBP01127 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PDGFBP01127 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PDGFBP01127 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PDGFBP01127 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PDGFBP01127 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC23.63■■□□□ 1.37
PDGFBP01127 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PDGFBP01127 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 162.3 ms