Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 PROC-203ENST00000409048 1586 ntTSL 5 BASIC21.24■□□□□ 0.99
COL6A6A6NMZ7 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL6A6A6NMZ7 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL6A6A6NMZ7 LINC01003-201ENST00000564834 1764 ntBASIC21.24■□□□□ 0.99
COL6A6A6NMZ7 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL6A6A6NMZ7 YBX1P1-201ENST00000445822 960 ntBASIC21.24■□□□□ 0.99
COL6A6A6NMZ7 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
COL6A6A6NMZ7 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A6A6NMZ7 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.23■□□□□ 0.99
COL6A6A6NMZ7 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.23■□□□□ 0.99
COL6A6A6NMZ7 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.23■□□□□ 0.99
COL6A6A6NMZ7 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.23■□□□□ 0.99
COL6A6A6NMZ7 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A6A6NMZ7 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A6A6NMZ7 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A6A6NMZ7 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL6A6A6NMZ7 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.22■□□□□ 0.99
COL6A6A6NMZ7 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL6A6A6NMZ7 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL6A6A6NMZ7 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.22■□□□□ 0.99
COL6A6A6NMZ7 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.22■□□□□ 0.99
COL6A6A6NMZ7 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.22■□□□□ 0.99
COL6A6A6NMZ7 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.22■□□□□ 0.99
COL6A6A6NMZ7 AC139426.1-201ENST00000568218 2529 ntBASIC21.22■□□□□ 0.99
COL6A6A6NMZ7 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL6A6A6NMZ7 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL6A6A6NMZ7 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
COL6A6A6NMZ7 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL6A6A6NMZ7 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.21■□□□□ 0.99
COL6A6A6NMZ7 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL6A6A6NMZ7 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.21■□□□□ 0.99
COL6A6A6NMZ7 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.21■□□□□ 0.99
COL6A6A6NMZ7 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.21■□□□□ 0.99
COL6A6A6NMZ7 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
COL6A6A6NMZ7 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.21■□□□□ 0.99
COL6A6A6NMZ7 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.99
COL6A6A6NMZ7 AC005703.6-201ENST00000623265 1329 ntBASIC21.2■□□□□ 0.99
COL6A6A6NMZ7 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.2■□□□□ 0.98
COL6A6A6NMZ7 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL6A6A6NMZ7 AC066615.1-201ENST00000640911 628 ntBASIC21.2■□□□□ 0.98
COL6A6A6NMZ7 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
COL6A6A6NMZ7 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL6A6A6NMZ7 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL6A6A6NMZ7 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL6A6A6NMZ7 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL6A6A6NMZ7 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL6A6A6NMZ7 HLA-L-209ENST00000420110 1011 ntBASIC21.19■□□□□ 0.98
COL6A6A6NMZ7 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.19■□□□□ 0.98
COL6A6A6NMZ7 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL6A6A6NMZ7 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.18■□□□□ 0.98
COL6A6A6NMZ7 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.18■□□□□ 0.98
COL6A6A6NMZ7 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL6A6A6NMZ7 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL6A6A6NMZ7 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.18■□□□□ 0.98
COL6A6A6NMZ7 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL6A6A6NMZ7 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL6A6A6NMZ7 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
COL6A6A6NMZ7 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL6A6A6NMZ7 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL6A6A6NMZ7 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL6A6A6NMZ7 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL6A6A6NMZ7 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.18■□□□□ 0.98
COL6A6A6NMZ7 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.18■□□□□ 0.98
COL6A6A6NMZ7 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A6A6NMZ7 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.17■□□□□ 0.98
COL6A6A6NMZ7 AC092171.4-201ENST00000609130 632 ntBASIC21.17■□□□□ 0.98
COL6A6A6NMZ7 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.17■□□□□ 0.98
COL6A6A6NMZ7 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A6A6NMZ7 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A6A6NMZ7 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A6A6NMZ7 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A6A6NMZ7 AC123595.1-201ENST00000440769 1046 ntBASIC21.17■□□□□ 0.98
COL6A6A6NMZ7 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A6A6NMZ7 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.17■□□□□ 0.98
COL6A6A6NMZ7 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL6A6A6NMZ7 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL6A6A6NMZ7 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
COL6A6A6NMZ7 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL6A6A6NMZ7 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL6A6A6NMZ7 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.16■□□□□ 0.98
COL6A6A6NMZ7 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.16■□□□□ 0.98
COL6A6A6NMZ7 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL6A6A6NMZ7 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL6A6A6NMZ7 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL6A6A6NMZ7 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.15■□□□□ 0.98
COL6A6A6NMZ7 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.15■□□□□ 0.98
COL6A6A6NMZ7 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.14■□□□□ 0.98
COL6A6A6NMZ7 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.14■□□□□ 0.97
COL6A6A6NMZ7 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.14■□□□□ 0.97
COL6A6A6NMZ7 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.14■□□□□ 0.97
COL6A6A6NMZ7 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
COL6A6A6NMZ7 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL6A6A6NMZ7 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.13■□□□□ 0.97
COL6A6A6NMZ7 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL6A6A6NMZ7 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.13■□□□□ 0.97
COL6A6A6NMZ7 AC233992.3-201ENST00000607491 485 ntBASIC21.13■□□□□ 0.97
COL6A6A6NMZ7 AC027612.3-201ENST00000413684 1047 ntBASIC21.13■□□□□ 0.97
COL6A6A6NMZ7 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.13■□□□□ 0.97
COL6A6A6NMZ7 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL6A6A6NMZ7 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms