Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV1-2A0A0B4J238 AC025884.2-201ENST00000553429 711 ntBASIC20.23■□□□□ 0.83
TRAV1-2A0A0B4J238 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
TRAV1-2A0A0B4J238 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV1-2A0A0B4J238 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV1-2A0A0B4J238 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV1-2A0A0B4J238 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV1-2A0A0B4J238 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
TRAV1-2A0A0B4J238 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.22■□□□□ 0.83
TRAV1-2A0A0B4J238 MIR3960-201ENST00000583311 91 ntBASIC20.22■□□□□ 0.83
TRAV1-2A0A0B4J238 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.22■□□□□ 0.83
TRAV1-2A0A0B4J238 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV1-2A0A0B4J238 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV1-2A0A0B4J238 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV1-2A0A0B4J238 AC233723.2-201ENST00000623798 2106 ntBASIC20.21■□□□□ 0.83
TRAV1-2A0A0B4J238 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.21■□□□□ 0.83
TRAV1-2A0A0B4J238 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV1-2A0A0B4J238 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV1-2A0A0B4J238 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV1-2A0A0B4J238 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.2■□□□□ 0.82
TRAV1-2A0A0B4J238 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
TRAV1-2A0A0B4J238 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV1-2A0A0B4J238 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV1-2A0A0B4J238 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV1-2A0A0B4J238 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV1-2A0A0B4J238 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV1-2A0A0B4J238 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
TRAV1-2A0A0B4J238 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV1-2A0A0B4J238 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TRAV1-2A0A0B4J238 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.19■□□□□ 0.82
TRAV1-2A0A0B4J238 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV1-2A0A0B4J238 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV1-2A0A0B4J238 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.19■□□□□ 0.82
TRAV1-2A0A0B4J238 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV1-2A0A0B4J238 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV1-2A0A0B4J238 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.19■□□□□ 0.82
TRAV1-2A0A0B4J238 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.19■□□□□ 0.82
TRAV1-2A0A0B4J238 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV1-2A0A0B4J238 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.18■□□□□ 0.82
TRAV1-2A0A0B4J238 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV1-2A0A0B4J238 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV1-2A0A0B4J238 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV1-2A0A0B4J238 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV1-2A0A0B4J238 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV1-2A0A0B4J238 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV1-2A0A0B4J238 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV1-2A0A0B4J238 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV1-2A0A0B4J238 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.18■□□□□ 0.82
TRAV1-2A0A0B4J238 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV1-2A0A0B4J238 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV1-2A0A0B4J238 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TRAV1-2A0A0B4J238 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
TRAV1-2A0A0B4J238 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.17■□□□□ 0.82
TRAV1-2A0A0B4J238 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
TRAV1-2A0A0B4J238 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
TRAV1-2A0A0B4J238 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
TRAV1-2A0A0B4J238 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV1-2A0A0B4J238 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV1-2A0A0B4J238 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV1-2A0A0B4J238 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV1-2A0A0B4J238 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.16■□□□□ 0.82
TRAV1-2A0A0B4J238 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV1-2A0A0B4J238 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV1-2A0A0B4J238 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV1-2A0A0B4J238 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
TRAV1-2A0A0B4J238 AL157400.5-201ENST00000507624 621 ntBASIC20.16■□□□□ 0.82
TRAV1-2A0A0B4J238 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV1-2A0A0B4J238 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV1-2A0A0B4J238 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV1-2A0A0B4J238 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV1-2A0A0B4J238 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV1-2A0A0B4J238 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV1-2A0A0B4J238 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
TRAV1-2A0A0B4J238 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV1-2A0A0B4J238 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.15■□□□□ 0.82
TRAV1-2A0A0B4J238 ANOS2P-203ENST00000472227 1816 ntBASIC20.14■□□□□ 0.81
TRAV1-2A0A0B4J238 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV1-2A0A0B4J238 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.14■□□□□ 0.81
TRAV1-2A0A0B4J238 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV1-2A0A0B4J238 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.14■□□□□ 0.81
TRAV1-2A0A0B4J238 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV1-2A0A0B4J238 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV1-2A0A0B4J238 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV1-2A0A0B4J238 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
TRAV1-2A0A0B4J238 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV1-2A0A0B4J238 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
TRAV1-2A0A0B4J238 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV1-2A0A0B4J238 FOXO3B-201ENST00000395675 1928 ntBASIC20.13■□□□□ 0.81
TRAV1-2A0A0B4J238 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV1-2A0A0B4J238 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV1-2A0A0B4J238 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.13■□□□□ 0.81
TRAV1-2A0A0B4J238 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV1-2A0A0B4J238 EP400NL-214ENST00000641289 2402 ntBASIC20.13■□□□□ 0.81
TRAV1-2A0A0B4J238 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV1-2A0A0B4J238 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV1-2A0A0B4J238 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV1-2A0A0B4J238 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV1-2A0A0B4J238 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV1-2A0A0B4J238 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.12■□□□□ 0.81
TRAV1-2A0A0B4J238 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms