Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 AC067863.1-201ENST00000494933 530 ntBASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 LINC01101-201ENST00000622953 1884 ntBASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.14■□□□□ 0.01
PCDHGA11Q9Y5H2 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 AL122018.1-201ENST00000446607 2310 ntBASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 KLF2P3-201ENST00000451977 1087 ntBASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 AC125807.1-201ENST00000483097 614 ntBASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 AC069120.2-201ENST00000524091 540 ntBASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 AP001160.2-201ENST00000596071 487 ntBASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 Z97205.2-201ENST00000564697 1639 ntBASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 CICP23-201ENST00000605013 2741 ntBASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
PCDHGA11Q9Y5H2 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDHGA11Q9Y5H2 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA11Q9Y5H2 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
PCDHGA11Q9Y5H2 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA11Q9Y5H2 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA11Q9Y5H2 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA11Q9Y5H2 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA11Q9Y5H2 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDHGA11Q9Y5H2 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA11Q9Y5H2 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PCDHGA11Q9Y5H2 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA11Q9Y5H2 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA11Q9Y5H2 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA11Q9Y5H2 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA11Q9Y5H2 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms