Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 AC079776.1-201ENST00000401540 1152 ntBASIC14.48□□□□□ -0.09
BEST3Q8N1M1 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 AC112492.5-201ENST00000421897 457 ntBASIC14.48□□□□□ -0.09
BEST3Q8N1M1 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 ACA64.2-201ENST00000459014 129 ntBASIC14.48□□□□□ -0.09
BEST3Q8N1M1 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 RAB43P1-201ENST00000561790 589 ntBASIC14.48□□□□□ -0.09
BEST3Q8N1M1 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 IFT20-216ENST00000588477 774 ntTSL 5 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 BRI3BPP1-201ENST00000594224 787 ntBASIC14.48□□□□□ -0.09
BEST3Q8N1M1 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 AL359711.2-201ENST00000563105 872 ntBASIC14.47□□□□□ -0.09
BEST3Q8N1M1 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 AC008735.3-201ENST00000596646 500 ntBASIC14.47□□□□□ -0.09
BEST3Q8N1M1 AC017083.2-201ENST00000608069 979 ntBASIC14.47□□□□□ -0.09
BEST3Q8N1M1 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 CU634019.7-201ENST00000624153 1185 ntBASIC14.47□□□□□ -0.09
BEST3Q8N1M1 FP236241.2-201ENST00000624906 1185 ntBASIC14.47□□□□□ -0.09
BEST3Q8N1M1 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
BEST3Q8N1M1 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 297.4 ms