Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC20.11■□□□□ 0.81
USP54Q70EL1 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC20.11■□□□□ 0.81
USP54Q70EL1 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP54Q70EL1 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP54Q70EL1 PUDPP3-201ENST00000445368 636 ntBASIC20.11■□□□□ 0.81
USP54Q70EL1 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP54Q70EL1 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC20.11■□□□□ 0.81
USP54Q70EL1 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC20.11■□□□□ 0.81
USP54Q70EL1 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC20.11■□□□□ 0.81
USP54Q70EL1 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC20.11■□□□□ 0.81
USP54Q70EL1 PCDH8P1-201ENST00000428983 2773 ntBASIC20.11■□□□□ 0.81
USP54Q70EL1 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP54Q70EL1 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP54Q70EL1 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP54Q70EL1 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP54Q70EL1 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP54Q70EL1 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP54Q70EL1 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
USP54Q70EL1 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC20.1■□□□□ 0.81
USP54Q70EL1 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
USP54Q70EL1 AC020922.3-201ENST00000595064 547 ntBASIC20.1■□□□□ 0.81
USP54Q70EL1 MIR6720-201ENST00000611664 98 ntBASIC20.1■□□□□ 0.81
USP54Q70EL1 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC20.1■□□□□ 0.81
USP54Q70EL1 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
USP54Q70EL1 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 AL157791.1-201ENST00000553667 1699 ntBASIC20.1■□□□□ 0.81
USP54Q70EL1 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC20.1■□□□□ 0.81
USP54Q70EL1 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 PTPA-215ENST00000432124 567 ntTSL 4 BASIC20.1■□□□□ 0.81
USP54Q70EL1 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC20.1■□□□□ 0.81
USP54Q70EL1 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC20.1■□□□□ 0.81
USP54Q70EL1 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC20.1■□□□□ 0.81
USP54Q70EL1 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC20.1■□□□□ 0.81
USP54Q70EL1 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
USP54Q70EL1 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP54Q70EL1 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC20.1■□□□□ 0.81
USP54Q70EL1 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC20.1■□□□□ 0.81
USP54Q70EL1 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC20.1■□□□□ 0.81
USP54Q70EL1 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
USP54Q70EL1 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
USP54Q70EL1 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
USP54Q70EL1 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC20.09■□□□□ 0.81
USP54Q70EL1 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP54Q70EL1 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
USP54Q70EL1 AC018629.1-201ENST00000623381 1736 ntBASIC20.09■□□□□ 0.81
USP54Q70EL1 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP54Q70EL1 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC20.09■□□□□ 0.81
USP54Q70EL1 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC20.09■□□□□ 0.81
USP54Q70EL1 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC20.09■□□□□ 0.81
USP54Q70EL1 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
USP54Q70EL1 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP54Q70EL1 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP54Q70EL1 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC20.09■□□□□ 0.81
USP54Q70EL1 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
USP54Q70EL1 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP54Q70EL1 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC20.09■□□□□ 0.81
USP54Q70EL1 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC20.09■□□□□ 0.81
USP54Q70EL1 OR2R1P-201ENST00000441404 914 ntBASIC20.09■□□□□ 0.81
USP54Q70EL1 AC006335.1-201ENST00000445200 547 ntBASIC20.09■□□□□ 0.81
USP54Q70EL1 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC20.09■□□□□ 0.81
USP54Q70EL1 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
USP54Q70EL1 MIR3677-201ENST00000578964 60 ntBASIC20.09■□□□□ 0.81
USP54Q70EL1 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
USP54Q70EL1 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.09■□□□□ 0.81
USP54Q70EL1 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
USP54Q70EL1 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC20.08■□□□□ 0.81
USP54Q70EL1 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC20.08■□□□□ 0.81
USP54Q70EL1 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
USP54Q70EL1 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
USP54Q70EL1 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC20.08■□□□□ 0.81
USP54Q70EL1 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.08■□□□□ 0.81
USP54Q70EL1 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
USP54Q70EL1 CICP12-201ENST00000455801 843 ntBASIC20.08■□□□□ 0.81
USP54Q70EL1 AC012618.1-201ENST00000461223 412 ntBASIC20.08■□□□□ 0.81
USP54Q70EL1 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
USP54Q70EL1 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
USP54Q70EL1 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC20.08■□□□□ 0.8
USP54Q70EL1 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP54Q70EL1 BID-213ENST00000615414 2236 ntTSL 5 BASIC20.08■□□□□ 0.8
USP54Q70EL1 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC20.08■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms