Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.43■□□□□ 0.54
CTR9Q6PD62 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTR9Q6PD62 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.43■□□□□ 0.54
CTR9Q6PD62 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.43■□□□□ 0.54
CTR9Q6PD62 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC18.43■□□□□ 0.54
CTR9Q6PD62 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTR9Q6PD62 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTR9Q6PD62 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CTR9Q6PD62 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CTR9Q6PD62 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 STK24-203ENST00000397517 4578 ntTSL 2 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 AL138799.1-201ENST00000448213 1675 ntBASIC18.42■□□□□ 0.54
CTR9Q6PD62 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 AC093433.1-201ENST00000458048 571 ntBASIC18.42■□□□□ 0.54
CTR9Q6PD62 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 SLC25A47P1-201ENST00000531577 414 ntBASIC18.42■□□□□ 0.54
CTR9Q6PD62 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 AC090616.6-203ENST00000579186 1945 ntBASIC18.42■□□□□ 0.54
CTR9Q6PD62 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.42■□□□□ 0.54
CTR9Q6PD62 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
CTR9Q6PD62 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTR9Q6PD62 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 IFT20-206ENST00000578122 834 ntTSL 2 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 IFT20-208ENST00000578985 831 ntTSL 3 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 AC007950.2-201ENST00000615045 2347 ntBASIC18.41■□□□□ 0.54
CTR9Q6PD62 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.41■□□□□ 0.54
CTR9Q6PD62 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTR9Q6PD62 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CTR9Q6PD62 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTR9Q6PD62 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CTR9Q6PD62 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CTR9Q6PD62 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTR9Q6PD62 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms