Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 AL122018.1-201ENST00000446607 2310 ntBASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 AC009090.5-201ENST00000624886 2285 ntBASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 AC148477.4-201ENST00000613430 1793 ntBASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 AC140658.5-201ENST00000438532 169 ntBASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 AP002472.1-201ENST00000577490 586 ntBASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 MKNK2P1-201ENST00000437526 628 ntBASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PPP4R4Q6NUP7 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms