Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 FDPSP7-201ENST00000429043 1054 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 AC026434.2-201ENST00000506094 1078 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 FAM86B3P-203ENST00000523992 854 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC10.85□□□□□ -0.67
PRKDCP78527 AC068880.1-201ENST00000507289 2297 ntBASIC10.85□□□□□ -0.67
PRKDCP78527 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
PRKDCP78527 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC10.84□□□□□ -0.67
PRKDCP78527 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC10.84□□□□□ -0.67
PRKDCP78527 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC10.84□□□□□ -0.67
PRKDCP78527 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
PRKDCP78527 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC10.84□□□□□ -0.67
PRKDCP78527 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC10.84□□□□□ -0.67
PRKDCP78527 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 MPI-203ENST00000535694 1523 ntTSL 2 BASIC10.84□□□□□ -0.67
PRKDCP78527 HLA-K-203ENST00000430151 1046 ntBASIC10.84□□□□□ -0.67
PRKDCP78527 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC10.84□□□□□ -0.67
PRKDCP78527 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC10.84□□□□□ -0.67
PRKDCP78527 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC10.84□□□□□ -0.67
PRKDCP78527 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC10.84□□□□□ -0.67
PRKDCP78527 AC006986.1-201ENST00000612764 241 ntBASIC10.84□□□□□ -0.67
PRKDCP78527 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
PRKDCP78527 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
PRKDCP78527 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
PRKDCP78527 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 AC020931.1-201ENST00000589622 1346 ntBASIC10.84□□□□□ -0.67
PRKDCP78527 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
PRKDCP78527 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC10.84□□□□□ -0.67
PRKDCP78527 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
PRKDCP78527 BANF1P3-201ENST00000412556 261 ntBASIC10.84□□□□□ -0.67
PRKDCP78527 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC10.84□□□□□ -0.67
PRKDCP78527 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC10.84□□□□□ -0.67
PRKDCP78527 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC10.84□□□□□ -0.67
PRKDCP78527 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC10.84□□□□□ -0.67
PRKDCP78527 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC10.84□□□□□ -0.67
PRKDCP78527 CYP4F23P-201ENST00000593402 1579 ntBASIC10.84□□□□□ -0.67
PRKDCP78527 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 PTGER4P2-201ENST00000328411 252 ntBASIC10.84□□□□□ -0.67
PRKDCP78527 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC10.84□□□□□ -0.67
PRKDCP78527 PTGER4P3-201ENST00000458150 252 ntBASIC10.84□□□□□ -0.67
PRKDCP78527 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC10.84□□□□□ -0.67
PRKDCP78527 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
PRKDCP78527 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.67
PRKDCP78527 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC10.83□□□□□ -0.68
PRKDCP78527 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC10.83□□□□□ -0.68
PRKDCP78527 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 AC018629.1-201ENST00000623381 1736 ntBASIC10.83□□□□□ -0.68
PRKDCP78527 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC10.83□□□□□ -0.68
PRKDCP78527 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
PRKDCP78527 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
PRKDCP78527 AC011477.6-201ENST00000604980 1927 ntBASIC10.83□□□□□ -0.68
PRKDCP78527 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC10.83□□□□□ -0.68
PRKDCP78527 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
PRKDCP78527 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 MAGEA7P-201ENST00000436482 942 ntBASIC10.83□□□□□ -0.68
PRKDCP78527 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC10.83□□□□□ -0.68
PRKDCP78527 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC10.83□□□□□ -0.68
PRKDCP78527 RNA5SP417-201ENST00000516459 108 ntBASIC10.83□□□□□ -0.68
PRKDCP78527 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC10.83□□□□□ -0.68
PRKDCP78527 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC10.83□□□□□ -0.68
PRKDCP78527 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC10.83□□□□□ -0.68
PRKDCP78527 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC10.83□□□□□ -0.68
PRKDCP78527 AC080013.5-201ENST00000607044 679 ntBASIC10.83□□□□□ -0.68
PRKDCP78527 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
PRKDCP78527 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 OR10N1P-201ENST00000392758 869 ntBASIC10.83□□□□□ -0.68
PRKDCP78527 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC10.83□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 130.2 ms