Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 NPPA-201ENST00000376476 728 ntTSL 3 BASIC17.89■□□□□ 0.45
CTCFP49711 SUN1-204ENST00000403868 978 ntTSL 2 BASIC17.89■□□□□ 0.45
CTCFP49711 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC17.89■□□□□ 0.45
CTCFP49711 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC17.89■□□□□ 0.45
CTCFP49711 MARK2P5-201ENST00000507649 634 ntBASIC17.89■□□□□ 0.45
CTCFP49711 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC17.89■□□□□ 0.45
CTCFP49711 SAMD11P1-201ENST00000571429 661 ntBASIC17.89■□□□□ 0.45
CTCFP49711 BNIP3P13-201ENST00000599968 566 ntBASIC17.89■□□□□ 0.45
CTCFP49711 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CTCFP49711 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CTCFP49711 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CTCFP49711 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CTCFP49711 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CTCFP49711 LINC02012-201ENST00000608206 1725 ntBASIC17.89■□□□□ 0.45
CTCFP49711 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CTCFP49711 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CTCFP49711 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CTCFP49711 GPAA1P2-202ENST00000606848 1787 ntBASIC17.89■□□□□ 0.45
CTCFP49711 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CTCFP49711 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CTCFP49711 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CTCFP49711 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CTCFP49711 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.88■□□□□ 0.45
CTCFP49711 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.88■□□□□ 0.45
CTCFP49711 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 AL133267.1-201ENST00000398220 340 ntBASIC17.88■□□□□ 0.45
CTCFP49711 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC17.88■□□□□ 0.45
CTCFP49711 ISCA2P1-201ENST00000425548 448 ntBASIC17.88■□□□□ 0.45
CTCFP49711 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC17.88■□□□□ 0.45
CTCFP49711 FAM8A4P-201ENST00000435433 1213 ntBASIC17.88■□□□□ 0.45
CTCFP49711 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC17.88■□□□□ 0.45
CTCFP49711 AC243562.2-201ENST00000561247 970 ntBASIC17.88■□□□□ 0.45
CTCFP49711 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC17.88■□□□□ 0.45
CTCFP49711 AL118516.1-201ENST00000564152 670 ntBASIC17.88■□□□□ 0.45
CTCFP49711 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 MIR4754-201ENST00000582477 89 ntBASIC17.88■□□□□ 0.45
CTCFP49711 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC17.88■□□□□ 0.45
CTCFP49711 AP001002.3-201ENST00000623482 206 ntBASIC17.88■□□□□ 0.45
CTCFP49711 AC233280.19-201ENST00000633223 136 ntBASIC17.88■□□□□ 0.45
CTCFP49711 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.88■□□□□ 0.45
CTCFP49711 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.88■□□□□ 0.45
CTCFP49711 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC17.88■□□□□ 0.45
CTCFP49711 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
CTCFP49711 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.88■□□□□ 0.45
CTCFP49711 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.88■□□□□ 0.45
CTCFP49711 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CTCFP49711 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
CTCFP49711 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CTCFP49711 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
CTCFP49711 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CTCFP49711 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CTCFP49711 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CTCFP49711 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.87■□□□□ 0.45
CTCFP49711 TK1-203ENST00000588734 1681 ntTSL 2 BASIC17.87■□□□□ 0.45
CTCFP49711 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CTCFP49711 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.87■□□□□ 0.45
CTCFP49711 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CTCFP49711 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CTCFP49711 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC17.87■□□□□ 0.45
CTCFP49711 ACTBP8-201ENST00000403258 1108 ntBASIC17.87■□□□□ 0.45
CTCFP49711 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC17.87■□□□□ 0.45
CTCFP49711 AC090857.1-201ENST00000527400 390 ntBASIC17.87■□□□□ 0.45
CTCFP49711 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CTCFP49711 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC17.87■□□□□ 0.45
CTCFP49711 IRF3-215ENST00000596822 823 ntTSL 3 BASIC17.87■□□□□ 0.45
CTCFP49711 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC17.87■□□□□ 0.45
CTCFP49711 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CTCFP49711 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
CTCFP49711 AC005915.1-201ENST00000624912 2018 ntBASIC17.87■□□□□ 0.45
CTCFP49711 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CTCFP49711 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC17.87■□□□□ 0.45
CTCFP49711 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CTCFP49711 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC17.87■□□□□ 0.45
CTCFP49711 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CTCFP49711 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CTCFP49711 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CTCFP49711 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.87■□□□□ 0.45
CTCFP49711 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CTCFP49711 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CTCFP49711 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.87■□□□□ 0.45
CTCFP49711 AL512652.2-201ENST00000625156 1716 ntBASIC17.86■□□□□ 0.45
CTCFP49711 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms