Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC136759.1-202ENST00000530858 2194 ntBASIC14.91□□□□□ -0.02
MSX2P35548 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.91□□□□□ -0.02
MSX2P35548 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
MSX2P35548 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX2P35548 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX2P35548 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC14.91□□□□□ -0.02
MSX2P35548 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX2P35548 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
MSX2P35548 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
MSX2P35548 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
MSX2P35548 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX2P35548 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX2P35548 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.91□□□□□ -0.02
MSX2P35548 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC14.91□□□□□ -0.02
MSX2P35548 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.91□□□□□ -0.02
MSX2P35548 PRSS29P-201ENST00000440800 595 ntBASIC14.91□□□□□ -0.02
MSX2P35548 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC14.91□□□□□ -0.02
MSX2P35548 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.91□□□□□ -0.02
MSX2P35548 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC14.91□□□□□ -0.02
MSX2P35548 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC14.91□□□□□ -0.02
MSX2P35548 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
MSX2P35548 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC14.91□□□□□ -0.02
MSX2P35548 TBCB-205ENST00000585746 875 ntTSL 3 BASIC14.91□□□□□ -0.02
MSX2P35548 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
MSX2P35548 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX2P35548 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX2P35548 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX2P35548 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
MSX2P35548 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.91□□□□□ -0.02
MSX2P35548 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX2P35548 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX2P35548 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX2P35548 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC14.91□□□□□ -0.02
MSX2P35548 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
MSX2P35548 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.9□□□□□ -0.02
MSX2P35548 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
MSX2P35548 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC14.9□□□□□ -0.02
MSX2P35548 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
MSX2P35548 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC14.9□□□□□ -0.02
MSX2P35548 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC14.9□□□□□ -0.02
MSX2P35548 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.9□□□□□ -0.02
MSX2P35548 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC14.9□□□□□ -0.02
MSX2P35548 AL138918.1-201ENST00000568306 659 ntBASIC14.9□□□□□ -0.02
MSX2P35548 AC061975.2-201ENST00000581722 295 ntBASIC14.9□□□□□ -0.02
MSX2P35548 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.9□□□□□ -0.02
MSX2P35548 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 AL450472.2-201ENST00000603663 1156 ntBASIC14.9□□□□□ -0.02
MSX2P35548 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.9□□□□□ -0.02
MSX2P35548 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
MSX2P35548 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
MSX2P35548 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.9□□□□□ -0.02
MSX2P35548 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
MSX2P35548 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
MSX2P35548 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
MSX2P35548 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.9□□□□□ -0.02
MSX2P35548 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.9□□□□□ -0.02
MSX2P35548 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX2P35548 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
MSX2P35548 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
MSX2P35548 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.89□□□□□ -0.03
MSX2P35548 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC14.89□□□□□ -0.03
MSX2P35548 FALEC-201ENST00000416894 566 ntTSL 3 BASIC14.89□□□□□ -0.03
MSX2P35548 ATP6V0CP3-201ENST00000417255 467 ntBASIC14.89□□□□□ -0.03
MSX2P35548 AC108751.1-201ENST00000490852 363 ntBASIC14.89□□□□□ -0.03
MSX2P35548 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
MSX2P35548 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC14.89□□□□□ -0.03
MSX2P35548 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.89□□□□□ -0.03
MSX2P35548 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
MSX2P35548 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
MSX2P35548 TP73-AS1-207ENST00000624167 988 ntBASIC14.89□□□□□ -0.03
MSX2P35548 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 HSPA7-201ENST00000445535 1927 ntBASIC14.89□□□□□ -0.03
MSX2P35548 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
MSX2P35548 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms