Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.71■□□□□ 0.11
PTPN4P29074 U82695.1-201ENST00000635752 1889 ntBASIC15.71■□□□□ 0.11
PTPN4P29074 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PTPN4P29074 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.71■□□□□ 0.1
PTPN4P29074 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PTPN4P29074 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
PTPN4P29074 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PTPN4P29074 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
PTPN4P29074 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.71■□□□□ 0.1
PTPN4P29074 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PTPN4P29074 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 AC011477.6-201ENST00000604980 1927 ntBASIC15.7■□□□□ 0.1
PTPN4P29074 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 CICP14-201ENST00000629111 2732 ntBASIC15.7■□□□□ 0.1
PTPN4P29074 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PTPN4P29074 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PTPN4P29074 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
PTPN4P29074 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.7■□□□□ 0.1
PTPN4P29074 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.7■□□□□ 0.1
PTPN4P29074 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN4P29074 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.7■□□□□ 0.1
PTPN4P29074 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN4P29074 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN4P29074 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.7■□□□□ 0.1
PTPN4P29074 AC140878.1-201ENST00000565277 250 ntBASIC15.7■□□□□ 0.1
PTPN4P29074 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
PTPN4P29074 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.7■□□□□ 0.1
PTPN4P29074 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.7■□□□□ 0.1
PTPN4P29074 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.7■□□□□ 0.1
PTPN4P29074 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.7■□□□□ 0.1
PTPN4P29074 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PTPN4P29074 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.7■□□□□ 0.1
PTPN4P29074 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.7■□□□□ 0.1
PTPN4P29074 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.7■□□□□ 0.1
PTPN4P29074 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN4P29074 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
PTPN4P29074 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN4P29074 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN4P29074 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
PTPN4P29074 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN4P29074 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN4P29074 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
PTPN4P29074 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN4P29074 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.7■□□□□ 0.1
PTPN4P29074 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN4P29074 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN4P29074 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
PTPN4P29074 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PTPN4P29074 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
PTPN4P29074 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PTPN4P29074 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC15.69■□□□□ 0.1
PTPN4P29074 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
PTPN4P29074 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.69■□□□□ 0.1
PTPN4P29074 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.69■□□□□ 0.1
PTPN4P29074 HAUS4P1-201ENST00000406739 1145 ntBASIC15.69■□□□□ 0.1
PTPN4P29074 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
PTPN4P29074 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.69■□□□□ 0.1
PTPN4P29074 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.69■□□□□ 0.1
PTPN4P29074 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.69■□□□□ 0.1
PTPN4P29074 ALG1L8P-201ENST00000533887 760 ntBASIC15.69■□□□□ 0.1
PTPN4P29074 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
PTPN4P29074 AP000842.3-202ENST00000569238 1080 ntBASIC15.69■□□□□ 0.1
PTPN4P29074 AC138761.1-201ENST00000584393 385 ntBASIC15.69■□□□□ 0.1
PTPN4P29074 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
PTPN4P29074 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN4P29074 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms