Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
VCANP13611 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VCANP13611 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC15.69■□□□□ 0.1
VCANP13611 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC15.69■□□□□ 0.1
VCANP13611 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC15.69■□□□□ 0.1
VCANP13611 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.69■□□□□ 0.1
VCANP13611 AL354861.1-201ENST00000445213 355 ntBASIC15.69■□□□□ 0.1
VCANP13611 HLA-J-204ENST00000495278 958 ntBASIC15.69■□□□□ 0.1
VCANP13611 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC15.69■□□□□ 0.1
VCANP13611 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC15.69■□□□□ 0.1
VCANP13611 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VCANP13611 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VCANP13611 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VCANP13611 AL158070.2-201ENST00000623713 1621 ntBASIC15.69■□□□□ 0.1
VCANP13611 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VCANP13611 AL138688.1-201ENST00000624851 1594 ntBASIC15.69■□□□□ 0.1
VCANP13611 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VCANP13611 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VCANP13611 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VCANP13611 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VCANP13611 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
VCANP13611 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
VCANP13611 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VCANP13611 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC15.69■□□□□ 0.1
VCANP13611 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC15.69■□□□□ 0.1
VCANP13611 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC15.69■□□□□ 0.1
VCANP13611 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC15.69■□□□□ 0.1
VCANP13611 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC15.69■□□□□ 0.1
VCANP13611 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
VCANP13611 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.69■□□□□ 0.1
VCANP13611 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VCANP13611 AC124068.2-201ENST00000569473 1109 ntBASIC15.69■□□□□ 0.1
VCANP13611 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
VCANP13611 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VCANP13611 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.68■□□□□ 0.1
VCANP13611 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VCANP13611 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VCANP13611 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.68■□□□□ 0.1
VCANP13611 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.68■□□□□ 0.1
VCANP13611 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.68■□□□□ 0.1
VCANP13611 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VCANP13611 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VCANP13611 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
VCANP13611 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
VCANP13611 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VCANP13611 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC15.68■□□□□ 0.1
VCANP13611 AC084018.2-201ENST00000613093 2607 ntBASIC15.68■□□□□ 0.1
VCANP13611 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.68■□□□□ 0.1
VCANP13611 AC013726.1-201ENST00000563747 2285 ntBASIC15.68■□□□□ 0.1
VCANP13611 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VCANP13611 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VCANP13611 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.68■□□□□ 0.1
VCANP13611 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VCANP13611 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VCANP13611 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.68■□□□□ 0.1
VCANP13611 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VCANP13611 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.68■□□□□ 0.1
VCANP13611 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.68■□□□□ 0.1
VCANP13611 OR10B1P-201ENST00000601666 907 ntBASIC15.68■□□□□ 0.1
VCANP13611 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VCANP13611 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC15.68■□□□□ 0.1
VCANP13611 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VCANP13611 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VCANP13611 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC15.68■□□□□ 0.1
VCANP13611 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
VCANP13611 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VCANP13611 LINC01165-201ENST00000445190 1623 ntBASIC15.67■□□□□ 0.1
VCANP13611 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VCANP13611 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC15.67■□□□□ 0.1
VCANP13611 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.67■□□□□ 0.1
VCANP13611 AC090820.1-201ENST00000519722 591 ntBASIC15.67■□□□□ 0.1
VCANP13611 TREHP1-201ENST00000531328 465 ntBASIC15.67■□□□□ 0.1
VCANP13611 CMC2-224ENST00000630396 481 ntTSL 5 BASIC15.67■□□□□ 0.1
VCANP13611 AC110057.1-201ENST00000636031 898 ntBASIC15.67■□□□□ 0.1
VCANP13611 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VCANP13611 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.67■□□□□ 0.1
VCANP13611 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.67■□□□□ 0.1
VCANP13611 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.67■□□□□ 0.1
VCANP13611 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
VCANP13611 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VCANP13611 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VCANP13611 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
VCANP13611 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VCANP13611 AC106827.1-201ENST00000366454 431 ntBASIC15.67■□□□□ 0.1
VCANP13611 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VCANP13611 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.67■□□□□ 0.1
VCANP13611 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.67■□□□□ 0.1
VCANP13611 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
VCANP13611 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC15.67■□□□□ 0.1
VCANP13611 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC15.67■□□□□ 0.1
VCANP13611 AL358472.3-201ENST00000608147 415 ntBASIC15.67■□□□□ 0.1
VCANP13611 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
VCANP13611 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.67■□□□□ 0.1
VCANP13611 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VCANP13611 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
VCANP13611 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VCANP13611 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
VCANP13611 TUBB8P12-201ENST00000308911 1335 ntBASIC15.67■□□□□ 0.1
VCANP13611 TUBB7P-202ENST00000428444 1305 ntBASIC15.67■□□□□ 0.1
VCANP13611 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms