Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
NPHP4O75161 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP4O75161 AL807761.2-201ENST00000422849 729 ntBASIC21.28■■□□□ 1
NPHP4O75161 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC21.28■■□□□ 1
NPHP4O75161 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
NPHP4O75161 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC21.28■■□□□ 1
NPHP4O75161 RN7SL396P-201ENST00000471086 295 ntBASIC21.28■■□□□ 1
NPHP4O75161 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP4O75161 AC073592.2-201ENST00000623062 780 ntBASIC21.28■■□□□ 1
NPHP4O75161 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC21.28■■□□□ 1
NPHP4O75161 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP4O75161 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
NPHP4O75161 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 KRT8P31-201ENST00000504812 1408 ntBASIC21.27■■□□□ 1
NPHP4O75161 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
NPHP4O75161 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC21.27■■□□□ 1
NPHP4O75161 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
NPHP4O75161 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC21.27■■□□□ 1
NPHP4O75161 FTH1P22-201ENST00000456305 520 ntBASIC21.27■■□□□ 1
NPHP4O75161 LINC00634-202ENST00000505157 222 ntBASIC21.27■■□□□ 1
NPHP4O75161 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
NPHP4O75161 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
NPHP4O75161 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC21.27■■□□□ 1
NPHP4O75161 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC21.27■■□□□ 1
NPHP4O75161 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC21.27■■□□□ 1
NPHP4O75161 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC21.27■■□□□ 1
NPHP4O75161 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
NPHP4O75161 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC21.27■■□□□ 1
NPHP4O75161 AC018695.6-201ENST00000614011 534 ntBASIC21.27■■□□□ 1
NPHP4O75161 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC21.27■■□□□ 1
NPHP4O75161 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC21.27■■□□□ 1
NPHP4O75161 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPHP4O75161 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
NPHP4O75161 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
NPHP4O75161 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC21.27■□□□□ 0.99
NPHP4O75161 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
NPHP4O75161 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
NPHP4O75161 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
NPHP4O75161 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC21.26■□□□□ 0.99
NPHP4O75161 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP4O75161 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP4O75161 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP4O75161 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP4O75161 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP4O75161 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP4O75161 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC21.26■□□□□ 0.99
NPHP4O75161 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC21.26■□□□□ 0.99
NPHP4O75161 AC124067.4-201ENST00000519691 2379 ntBASIC21.26■□□□□ 0.99
NPHP4O75161 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP4O75161 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP4O75161 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC21.26■□□□□ 0.99
NPHP4O75161 AREG-202ENST00000502307 956 ntTSL 5 BASIC21.26■□□□□ 0.99
NPHP4O75161 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC21.26■□□□□ 0.99
NPHP4O75161 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC21.26■□□□□ 0.99
NPHP4O75161 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC21.26■□□□□ 0.99
NPHP4O75161 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC21.26■□□□□ 0.99
NPHP4O75161 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
NPHP4O75161 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
NPHP4O75161 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC21.26■□□□□ 0.99
NPHP4O75161 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP4O75161 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP4O75161 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
NPHP4O75161 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC21.25■□□□□ 0.99
NPHP4O75161 RAN-210ENST00000541630 1475 ntTSL 2 BASIC21.25■□□□□ 0.99
NPHP4O75161 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC21.25■□□□□ 0.99
NPHP4O75161 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC21.25■□□□□ 0.99
NPHP4O75161 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC21.25■□□□□ 0.99
NPHP4O75161 AL157407.1-201ENST00000435784 904 ntBASIC21.25■□□□□ 0.99
NPHP4O75161 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
NPHP4O75161 MIR3180-2-201ENST00000581748 88 ntBASIC21.25■□□□□ 0.99
NPHP4O75161 AP001184.1-201ENST00000637936 376 ntBASIC21.25■□□□□ 0.99
NPHP4O75161 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC21.25■□□□□ 0.99
NPHP4O75161 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC21.25■□□□□ 0.99
NPHP4O75161 KRT18P9-201ENST00000604826 1300 ntBASIC21.25■□□□□ 0.99
NPHP4O75161 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms