Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.72□□□□□ -0.21
LMX1BO60663 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.72□□□□□ -0.21
LMX1BO60663 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.72□□□□□ -0.21
LMX1BO60663 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 AP3S2-216ENST00000617003 1561 ntBASIC13.72□□□□□ -0.21
LMX1BO60663 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 HLA-H-201ENST00000383620 1096 ntBASIC13.72□□□□□ -0.21
LMX1BO60663 HNRNPA3P1-201ENST00000401429 1139 ntBASIC13.72□□□□□ -0.21
LMX1BO60663 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC13.72□□□□□ -0.21
LMX1BO60663 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC13.72□□□□□ -0.21
LMX1BO60663 NME2P1-201ENST00000426182 414 ntBASIC13.72□□□□□ -0.21
LMX1BO60663 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC13.72□□□□□ -0.21
LMX1BO60663 HNRNPA3P5-201ENST00000455201 833 ntBASIC13.72□□□□□ -0.21
LMX1BO60663 RN7SL692P-201ENST00000464677 288 ntBASIC13.72□□□□□ -0.21
LMX1BO60663 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC13.72□□□□□ -0.21
LMX1BO60663 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC13.72□□□□□ -0.21
LMX1BO60663 HNRNPUP1-201ENST00000554987 333 ntBASIC13.72□□□□□ -0.21
LMX1BO60663 AL596325.1-201ENST00000563991 1082 ntBASIC13.72□□□□□ -0.21
LMX1BO60663 AC097359.3-201ENST00000603982 1210 ntBASIC13.72□□□□□ -0.21
LMX1BO60663 AC018529.1-201ENST00000613063 361 ntBASIC13.72□□□□□ -0.21
LMX1BO60663 AC148477.4-201ENST00000613430 1793 ntBASIC13.72□□□□□ -0.21
LMX1BO60663 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
LMX1BO60663 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 CICP23-201ENST00000605013 2741 ntBASIC13.72□□□□□ -0.21
LMX1BO60663 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
LMX1BO60663 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.72□□□□□ -0.21
LMX1BO60663 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.72□□□□□ -0.21
LMX1BO60663 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LMX1BO60663 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
LMX1BO60663 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC13.71□□□□□ -0.21
LMX1BO60663 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
LMX1BO60663 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC13.71□□□□□ -0.21
LMX1BO60663 SNX18-202ENST00000343017 3140 ntBASIC13.71□□□□□ -0.21
LMX1BO60663 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
LMX1BO60663 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC13.71□□□□□ -0.21
LMX1BO60663 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.71□□□□□ -0.21
LMX1BO60663 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC13.71□□□□□ -0.21
LMX1BO60663 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC13.71□□□□□ -0.21
LMX1BO60663 AZGP1P1-201ENST00000411909 902 ntBASIC13.71□□□□□ -0.21
LMX1BO60663 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC13.71□□□□□ -0.21
LMX1BO60663 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC13.71□□□□□ -0.21
LMX1BO60663 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC13.71□□□□□ -0.21
LMX1BO60663 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC13.71□□□□□ -0.21
LMX1BO60663 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 KRT17P7-201ENST00000451704 1104 ntBASIC13.71□□□□□ -0.21
LMX1BO60663 AL139010.1-201ENST00000454878 894 ntBASIC13.71□□□□□ -0.21
LMX1BO60663 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.71□□□□□ -0.21
LMX1BO60663 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
LMX1BO60663 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
LMX1BO60663 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
LMX1BO60663 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC13.71□□□□□ -0.21
LMX1BO60663 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
LMX1BO60663 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC13.71□□□□□ -0.21
LMX1BO60663 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC13.71□□□□□ -0.21
LMX1BO60663 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC13.71□□□□□ -0.21
LMX1BO60663 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
LMX1BO60663 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 HADH-212ENST00000638621 741 ntTSL 5 BASIC13.71□□□□□ -0.21
LMX1BO60663 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LMX1BO60663 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
LMX1BO60663 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
LMX1BO60663 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.71□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms