Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH4O15457 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH4O15457 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
MSH4O15457 AC013268.4-201ENST00000637413 2228 ntBASIC17.36■□□□□ 0.37
MSH4O15457 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.36■□□□□ 0.37
MSH4O15457 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH4O15457 AL158070.2-201ENST00000623713 1621 ntBASIC17.36■□□□□ 0.37
MSH4O15457 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.36■□□□□ 0.37
MSH4O15457 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
MSH4O15457 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 RNU1-114P-201ENST00000365297 166 ntBASIC17.35■□□□□ 0.37
MSH4O15457 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
MSH4O15457 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.35■□□□□ 0.37
MSH4O15457 AC079776.1-201ENST00000401540 1152 ntBASIC17.35■□□□□ 0.37
MSH4O15457 AC012441.1-201ENST00000446669 685 ntBASIC17.35■□□□□ 0.37
MSH4O15457 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.35■□□□□ 0.37
MSH4O15457 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.35■□□□□ 0.37
MSH4O15457 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.35■□□□□ 0.37
MSH4O15457 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.35■□□□□ 0.37
MSH4O15457 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.35■□□□□ 0.37
MSH4O15457 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.35■□□□□ 0.37
MSH4O15457 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.35■□□□□ 0.37
MSH4O15457 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.35■□□□□ 0.37
MSH4O15457 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.35■□□□□ 0.37
MSH4O15457 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC17.35■□□□□ 0.37
MSH4O15457 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.35■□□□□ 0.37
MSH4O15457 PRSS30P-206ENST00000641773 873 ntBASIC17.35■□□□□ 0.37
MSH4O15457 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
MSH4O15457 AC134312.5-201ENST00000568031 1313 ntBASIC17.35■□□□□ 0.37
MSH4O15457 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.35■□□□□ 0.37
MSH4O15457 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.35■□□□□ 0.37
MSH4O15457 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC17.35■□□□□ 0.37
MSH4O15457 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.35■□□□□ 0.37
MSH4O15457 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
MSH4O15457 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.35■□□□□ 0.37
MSH4O15457 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
MSH4O15457 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC17.35■□□□□ 0.37
MSH4O15457 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
MSH4O15457 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
MSH4O15457 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
MSH4O15457 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH4O15457 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH4O15457 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.34■□□□□ 0.37
MSH4O15457 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH4O15457 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH4O15457 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH4O15457 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.34■□□□□ 0.37
MSH4O15457 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
MSH4O15457 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSH4O15457 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC17.34■□□□□ 0.37
MSH4O15457 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC17.34■□□□□ 0.37
MSH4O15457 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.34■□□□□ 0.37
MSH4O15457 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.34■□□□□ 0.37
MSH4O15457 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.34■□□□□ 0.37
MSH4O15457 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.34■□□□□ 0.37
MSH4O15457 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSH4O15457 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH4O15457 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.34■□□□□ 0.37
MSH4O15457 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH4O15457 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.34■□□□□ 0.37
MSH4O15457 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
MSH4O15457 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH4O15457 AC233724.13-201ENST00000598383 410 ntBASIC17.34■□□□□ 0.37
MSH4O15457 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC17.34■□□□□ 0.37
MSH4O15457 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
MSH4O15457 AP005019.2-201ENST00000615104 511 ntBASIC17.34■□□□□ 0.37
MSH4O15457 AL162274.1-201ENST00000617191 1098 ntBASIC17.34■□□□□ 0.37
MSH4O15457 AC023024.2-201ENST00000623561 1993 ntBASIC17.34■□□□□ 0.37
MSH4O15457 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC17.34■□□□□ 0.37
MSH4O15457 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
MSH4O15457 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH4O15457 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSH4O15457 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
MSH4O15457 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSH4O15457 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.33■□□□□ 0.37
MSH4O15457 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MSH4O15457 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSH4O15457 MST1L-201ENST00000442552 2185 ntBASIC17.33■□□□□ 0.37
MSH4O15457 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MSH4O15457 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC17.33■□□□□ 0.37
MSH4O15457 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC17.33■□□□□ 0.37
MSH4O15457 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MSH4O15457 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms