Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PPA1-206ENST00000625364 644 ntTSL 5 BASIC19.59■□□□□ 0.73
NPHP1O15259 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP1O15259 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP1O15259 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC19.59■□□□□ 0.73
NPHP1O15259 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP1O15259 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC19.59■□□□□ 0.73
NPHP1O15259 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.59■□□□□ 0.73
NPHP1O15259 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
NPHP1O15259 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP1O15259 FUK-207ENST00000571514 3054 ntTSL 2 BASIC19.59■□□□□ 0.73
NPHP1O15259 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC19.59■□□□□ 0.73
NPHP1O15259 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP1O15259 TK1-203ENST00000588734 1681 ntTSL 2 BASIC19.59■□□□□ 0.73
NPHP1O15259 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP1O15259 AC126755.1-201ENST00000525846 6405 ntBASIC19.58■□□□□ 0.73
NPHP1O15259 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.58■□□□□ 0.73
NPHP1O15259 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP1O15259 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.58■□□□□ 0.73
NPHP1O15259 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP1O15259 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP1O15259 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC19.58■□□□□ 0.73
NPHP1O15259 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP1O15259 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC19.58■□□□□ 0.73
NPHP1O15259 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.73
NPHP1O15259 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
NPHP1O15259 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
NPHP1O15259 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.58■□□□□ 0.73
NPHP1O15259 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP1O15259 ME2P1-201ENST00000426028 1970 ntBASIC19.58■□□□□ 0.73
NPHP1O15259 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP1O15259 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP1O15259 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP1O15259 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
NPHP1O15259 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC19.58■□□□□ 0.72
NPHP1O15259 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC19.58■□□□□ 0.72
NPHP1O15259 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP1O15259 PFN2-215ENST00000497148 743 ntTSL 4 BASIC19.58■□□□□ 0.72
NPHP1O15259 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC19.58■□□□□ 0.72
NPHP1O15259 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC19.58■□□□□ 0.72
NPHP1O15259 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP1O15259 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC19.58■□□□□ 0.72
NPHP1O15259 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC19.58■□□□□ 0.72
NPHP1O15259 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC19.58■□□□□ 0.72
NPHP1O15259 PRKN-211ENST00000615065 261 ntTSL 5 BASIC19.58■□□□□ 0.72
NPHP1O15259 AC145423.3-201ENST00000615987 467 ntBASIC19.58■□□□□ 0.72
NPHP1O15259 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP1O15259 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC19.58■□□□□ 0.72
NPHP1O15259 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP1O15259 PCDHB19P-201ENST00000570871 2371 ntBASIC19.58■□□□□ 0.72
NPHP1O15259 AC068418.2-201ENST00000577309 3703 ntBASIC19.58■□□□□ 0.72
NPHP1O15259 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP1O15259 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP1O15259 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP1O15259 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC19.58■□□□□ 0.72
NPHP1O15259 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC19.58■□□□□ 0.72
NPHP1O15259 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP1O15259 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC19.58■□□□□ 0.72
NPHP1O15259 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
NPHP1O15259 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC19.58■□□□□ 0.72
NPHP1O15259 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
NPHP1O15259 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP1O15259 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
NPHP1O15259 KRT8P35-201ENST00000483942 1338 ntBASIC19.57■□□□□ 0.72
NPHP1O15259 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP1O15259 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.57■□□□□ 0.72
NPHP1O15259 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP1O15259 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP1O15259 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC19.57■□□□□ 0.72
NPHP1O15259 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC19.57■□□□□ 0.72
NPHP1O15259 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC19.57■□□□□ 0.72
NPHP1O15259 RPS3-201ENST00000278572 907 ntTSL 3 BASIC19.57■□□□□ 0.72
NPHP1O15259 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
NPHP1O15259 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
NPHP1O15259 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC19.57■□□□□ 0.72
NPHP1O15259 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
NPHP1O15259 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC19.57■□□□□ 0.72
NPHP1O15259 MIR1202-201ENST00000408529 83 ntBASIC19.57■□□□□ 0.72
NPHP1O15259 AC007969.1-201ENST00000433675 447 ntBASIC19.57■□□□□ 0.72
NPHP1O15259 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 OARD1-212ENST00000482515 832 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP1O15259 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC19.57■□□□□ 0.72
NPHP1O15259 ZNF767P-206ENST00000513792 565 ntBASIC19.57■□□□□ 0.72
NPHP1O15259 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
NPHP1O15259 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP1O15259 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP1O15259 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC19.57■□□□□ 0.72
NPHP1O15259 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms