Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 SMS-201ENST00000379404 1174 ntTSL 3 BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 EEF1DP6-201ENST00000449232 372 ntBASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC29.22■■■□□ 2.27
SHROOM4Q9ULL8 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 UFM1-202ENST00000379649 846 ntTSL 4 BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 ECM1P1-201ENST00000604092 1279 ntBASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 AC008132.1-202ENST00000342005 1389 ntBASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC29.21■■■□□ 2.27
SHROOM4Q9ULL8 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC29.2■■■□□ 2.27
SHROOM4Q9ULL8 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
SHROOM4Q9ULL8 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
SHROOM4Q9ULL8 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
SHROOM4Q9ULL8 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
SHROOM4Q9ULL8 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC29.2■■■□□ 2.27
SHROOM4Q9ULL8 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
SHROOM4Q9ULL8 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
SHROOM4Q9ULL8 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 B9D1-203ENST00000395615 805 ntTSL 3 BASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 AL627389.1-201ENST00000413508 1182 ntBASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 NKAIN1P1-201ENST00000435754 582 ntBASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 AC025181.2-201ENST00000606994 802 ntBASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 AL118508.1-201ENST00000613502 2345 ntBASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC29.2■■■□□ 2.26
SHROOM4Q9ULL8 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
SHROOM4Q9ULL8 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC29.19■■■□□ 2.26
SHROOM4Q9ULL8 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC29.19■■■□□ 2.26
SHROOM4Q9ULL8 SUN1-204ENST00000403868 978 ntTSL 2 BASIC29.19■■■□□ 2.26
SHROOM4Q9ULL8 AC069218.1-201ENST00000435269 762 ntBASIC29.19■■■□□ 2.26
SHROOM4Q9ULL8 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
SHROOM4Q9ULL8 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC29.19■■■□□ 2.26
SHROOM4Q9ULL8 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
SHROOM4Q9ULL8 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
SHROOM4Q9ULL8 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC29.19■■■□□ 2.26
SHROOM4Q9ULL8 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC29.19■■■□□ 2.26
SHROOM4Q9ULL8 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC29.19■■■□□ 2.26
SHROOM4Q9ULL8 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC29.19■■■□□ 2.26
SHROOM4Q9ULL8 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 CYP2T1P-202ENST00000641596 2535 ntBASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 NUP210P1-202ENST00000504322 710 ntBASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 AC100757.4-201ENST00000626934 759 ntBASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 CICP13-201ENST00000422015 2789 ntBASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 AC006480.2-201ENST00000609770 1337 ntBASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 ACE-203ENST00000413513 2237 ntTSL 2 BASIC29.18■■■□□ 2.26
SHROOM4Q9ULL8 AL138799.1-201ENST00000448213 1675 ntBASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC29.17■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms