Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH9Q9ULB4 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CDH9Q9ULB4 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CDH9Q9ULB4 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH9Q9ULB4 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CDH9Q9ULB4 AC093525.8-201ENST00000624099 1342 ntBASIC16.38■□□□□ 0.21
CDH9Q9ULB4 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH9Q9ULB4 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
CDH9Q9ULB4 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH9Q9ULB4 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.38■□□□□ 0.21
CDH9Q9ULB4 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH9Q9ULB4 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH9Q9ULB4 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CDH9Q9ULB4 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
CDH9Q9ULB4 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.37■□□□□ 0.21
CDH9Q9ULB4 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.37■□□□□ 0.21
CDH9Q9ULB4 ARSEP1-201ENST00000420443 635 ntBASIC16.37■□□□□ 0.21
CDH9Q9ULB4 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 HILS1-202ENST00000545329 423 ntBASIC16.37■□□□□ 0.21
CDH9Q9ULB4 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 AC087481.3-201ENST00000602886 1894 ntBASIC16.37■□□□□ 0.21
CDH9Q9ULB4 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CDH9Q9ULB4 MSTO2P-201ENST00000314835 1709 ntBASIC16.36■□□□□ 0.21
CDH9Q9ULB4 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 AC007787.1-201ENST00000588095 1583 ntBASIC16.36■□□□□ 0.21
CDH9Q9ULB4 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 AL645937.2-201ENST00000396808 931 ntBASIC16.36■□□□□ 0.21
CDH9Q9ULB4 AC234783.1-201ENST00000441761 496 ntBASIC16.36■□□□□ 0.21
CDH9Q9ULB4 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 SAMD11P1-201ENST00000571429 661 ntBASIC16.36■□□□□ 0.21
CDH9Q9ULB4 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 AL512343.1-201ENST00000605837 169 ntBASIC16.36■□□□□ 0.21
CDH9Q9ULB4 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH9Q9ULB4 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CDH9Q9ULB4 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH9Q9ULB4 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDH9Q9ULB4 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms