Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL121723.1-201ENST00000445194 1519 ntBASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 AC025048.6-201ENST00000634326 1161 ntBASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRIM39Q9HCM9 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 MYCLP2-201ENST00000449268 967 ntBASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 FAM86LP-201ENST00000478302 853 ntBASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 AC015910.1-201ENST00000579400 975 ntBASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 AC000095.1-201ENST00000603208 874 ntBASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 TMEM261P1-201ENST00000604899 340 ntBASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 AC008494.3-201ENST00000606615 944 ntBASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 MIR8072-201ENST00000614241 80 ntBASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 AC007431.3-201ENST00000623221 587 ntBASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 AL358472.5-202ENST00000641448 1267 ntBASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
TRIM39Q9HCM9 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms