Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 CU634019.7-201ENST00000624153 1185 ntBASIC18.29■□□□□ 0.52
RNF41Q9H4P4 FP236241.2-201ENST00000624906 1185 ntBASIC18.29■□□□□ 0.52
RNF41Q9H4P4 AC112693.3-201ENST00000624819 1983 ntBASIC18.29■□□□□ 0.52
RNF41Q9H4P4 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 AC004066.1-201ENST00000502488 802 ntBASIC18.28■□□□□ 0.52
RNF41Q9H4P4 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 AC012645.4-201ENST00000610691 1061 ntBASIC18.28■□□□□ 0.52
RNF41Q9H4P4 SRP9-204ENST00000619790 377 ntTSL 2 BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 C18orf15-201ENST00000623680 2534 ntBASIC18.28■□□□□ 0.52
RNF41Q9H4P4 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 AC022532.1-201ENST00000624563 1728 ntBASIC18.28■□□□□ 0.52
RNF41Q9H4P4 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNF41Q9H4P4 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 COX5BP8-201ENST00000416911 349 ntBASIC18.27■□□□□ 0.52
RNF41Q9H4P4 NME2P1-201ENST00000426182 414 ntBASIC18.27■□□□□ 0.52
RNF41Q9H4P4 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNF41Q9H4P4 AC126365.1-201ENST00000578585 1514 ntBASIC18.27■□□□□ 0.51
RNF41Q9H4P4 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RNF41Q9H4P4 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RNF41Q9H4P4 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
RNF41Q9H4P4 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNF41Q9H4P4 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC18.26■□□□□ 0.51
RNF41Q9H4P4 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC18.26■□□□□ 0.51
RNF41Q9H4P4 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
RNF41Q9H4P4 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNF41Q9H4P4 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms