Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 AC148477.9-201ENST00000623974 539 ntBASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 PAM16-211ENST00000575848 518 ntTSL 3 BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 AC007718.1-201ENST00000621078 280 ntBASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 CMC2-224ENST00000630396 481 ntTSL 5 BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 AL137783.1-201ENST00000623494 1896 ntBASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK3Q9BYB0 AC006122.1-201ENST00000493323 440 ntBASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 TMCO5B-205ENST00000530020 894 ntBASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 AC008805.1-201ENST00000590892 364 ntBASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 AL360270.3-201ENST00000609118 1348 ntBASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 AC010491.1-201ENST00000563101 2797 ntBASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 AC026316.1-201ENST00000398900 414 ntBASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 RN7SL163P-201ENST00000583100 276 ntBASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 API5-202ENST00000420461 2009 ntTSL 2 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 WT1-209ENST00000530998 2421 ntTSL 2 BASIC19.56■□□□□ 0.72
SHANK3Q9BYB0 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 WT1-AS_6.1-201ENST00000614919 121 ntBASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 COX6A1P2-201ENST00000620597 330 ntBASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 PKD1P6-201ENST00000343738 4769 ntBASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 CICP11-201ENST00000434745 2827 ntBASIC19.55■□□□□ 0.72
SHANK3Q9BYB0 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHANK3Q9BYB0 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms