Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 AC009477.1-201ENST00000452936 217 ntBASIC13.84□□□□□ -0.19
SKA3Q8IX90 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 AC004890.2-204ENST00000481968 304 ntBASIC13.84□□□□□ -0.19
SKA3Q8IX90 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 AC009407.1-201ENST00000568958 598 ntBASIC13.84□□□□□ -0.19
SKA3Q8IX90 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SKA3Q8IX90 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 CICP14-201ENST00000629111 2732 ntBASIC13.84□□□□□ -0.19
SKA3Q8IX90 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.84□□□□□ -0.19
SKA3Q8IX90 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
SKA3Q8IX90 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
SKA3Q8IX90 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13.83□□□□□ -0.19
SKA3Q8IX90 AC138969.2-201ENST00000532739 9932 ntBASIC13.83□□□□□ -0.19
SKA3Q8IX90 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
SKA3Q8IX90 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
SKA3Q8IX90 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC13.83□□□□□ -0.19
SKA3Q8IX90 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 AC105250.1-201ENST00000509378 2057 ntBASIC13.83□□□□□ -0.2
SKA3Q8IX90 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 MIR770-201ENST00000390219 98 ntBASIC13.83□□□□□ -0.2
SKA3Q8IX90 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 ZNF890P-202ENST00000530367 1156 ntBASIC13.83□□□□□ -0.2
SKA3Q8IX90 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 AC074044.1-201ENST00000609673 707 ntBASIC13.83□□□□□ -0.2
SKA3Q8IX90 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 AC127383.1-201ENST00000444697 1800 ntBASIC13.83□□□□□ -0.2
SKA3Q8IX90 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC13.83□□□□□ -0.2
SKA3Q8IX90 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SKA3Q8IX90 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms