Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
TFF3Q07654 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
TFF3Q07654 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
TFF3Q07654 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.68□□□□□ -0.22
TFF3Q07654 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
TFF3Q07654 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
TFF3Q07654 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
TFF3Q07654 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
TFF3Q07654 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
TFF3Q07654 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
TFF3Q07654 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 AC005052.1-201ENST00000625181 2492 ntBASIC13.67□□□□□ -0.22
TFF3Q07654 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC13.67□□□□□ -0.22
TFF3Q07654 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 PGGT1BP2-201ENST00000398621 1028 ntBASIC13.67□□□□□ -0.22
TFF3Q07654 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.67□□□□□ -0.22
TFF3Q07654 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC13.67□□□□□ -0.22
TFF3Q07654 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.67□□□□□ -0.22
TFF3Q07654 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.67□□□□□ -0.22
TFF3Q07654 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.67□□□□□ -0.22
TFF3Q07654 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.67□□□□□ -0.22
TFF3Q07654 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC13.67□□□□□ -0.22
TFF3Q07654 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.67□□□□□ -0.22
TFF3Q07654 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.67□□□□□ -0.22
TFF3Q07654 AL118558.3-201ENST00000607414 1079 ntBASIC13.67□□□□□ -0.22
TFF3Q07654 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC13.67□□□□□ -0.22
TFF3Q07654 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC13.67□□□□□ -0.22
TFF3Q07654 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC13.67□□□□□ -0.22
TFF3Q07654 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.67□□□□□ -0.22
TFF3Q07654 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC13.67□□□□□ -0.22
TFF3Q07654 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.67□□□□□ -0.22
TFF3Q07654 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
TFF3Q07654 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.67□□□□□ -0.22
TFF3Q07654 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.67□□□□□ -0.22
TFF3Q07654 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
TFF3Q07654 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
TFF3Q07654 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
TFF3Q07654 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.66□□□□□ -0.22
TFF3Q07654 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.66□□□□□ -0.22
TFF3Q07654 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
TFF3Q07654 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
TFF3Q07654 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
TFF3Q07654 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC13.66□□□□□ -0.22
TFF3Q07654 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC13.66□□□□□ -0.22
TFF3Q07654 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
TFF3Q07654 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
TFF3Q07654 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.66□□□□□ -0.22
TFF3Q07654 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC13.66□□□□□ -0.22
TFF3Q07654 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
TFF3Q07654 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
TFF3Q07654 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.66□□□□□ -0.22
TFF3Q07654 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC13.66□□□□□ -0.22
TFF3Q07654 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
TFF3Q07654 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TFF3Q07654 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC13.66□□□□□ -0.22
TFF3Q07654 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
TFF3Q07654 ME2P1-201ENST00000426028 1970 ntBASIC13.66□□□□□ -0.22
TFF3Q07654 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TFF3Q07654 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TFF3Q07654 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TFF3Q07654 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TFF3Q07654 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
TFF3Q07654 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC13.66□□□□□ -0.22
TFF3Q07654 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC13.66□□□□□ -0.22
TFF3Q07654 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
TFF3Q07654 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC13.66□□□□□ -0.22
TFF3Q07654 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
TFF3Q07654 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC13.66□□□□□ -0.22
TFF3Q07654 GAPDHP40-201ENST00000505218 1006 ntBASIC13.66□□□□□ -0.22
TFF3Q07654 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC13.66□□□□□ -0.22
TFF3Q07654 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms