Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 AL512343.1-201ENST00000605837 169 ntBASIC15.4■□□□□ 0.06
SRP54P61011 MIR6805-201ENST00000615055 62 ntBASIC15.4■□□□□ 0.06
SRP54P61011 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SRP54P61011 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
SRP54P61011 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SRP54P61011 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SRP54P61011 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SRP54P61011 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SRP54P61011 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.4■□□□□ 0.06
SRP54P61011 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SRP54P61011 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SRP54P61011 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SRP54P61011 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SRP54P61011 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SRP54P61011 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.4■□□□□ 0.06
SRP54P61011 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.4■□□□□ 0.06
SRP54P61011 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SRP54P61011 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.39■□□□□ 0.06
SRP54P61011 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SRP54P61011 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
SRP54P61011 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
SRP54P61011 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.39■□□□□ 0.05
SRP54P61011 AC067930.6-201ENST00000623257 4947 ntBASIC15.39■□□□□ 0.05
SRP54P61011 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.39■□□□□ 0.05
SRP54P61011 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.39■□□□□ 0.05
SRP54P61011 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
SRP54P61011 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.39■□□□□ 0.05
SRP54P61011 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SRP54P61011 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC15.39■□□□□ 0.05
SRP54P61011 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
SRP54P61011 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.39■□□□□ 0.05
SRP54P61011 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.39■□□□□ 0.05
SRP54P61011 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.39■□□□□ 0.05
SRP54P61011 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.39■□□□□ 0.05
SRP54P61011 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
SRP54P61011 TDH-203ENST00000531764 1110 ntBASIC15.39■□□□□ 0.05
SRP54P61011 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.39■□□□□ 0.05
SRP54P61011 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.39■□□□□ 0.05
SRP54P61011 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.39■□□□□ 0.05
SRP54P61011 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.39■□□□□ 0.05
SRP54P61011 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
SRP54P61011 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.39■□□□□ 0.05
SRP54P61011 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
SRP54P61011 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.39■□□□□ 0.05
SRP54P61011 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SRP54P61011 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.38■□□□□ 0.05
SRP54P61011 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.38■□□□□ 0.05
SRP54P61011 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.38■□□□□ 0.05
SRP54P61011 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
SRP54P61011 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.38■□□□□ 0.05
SRP54P61011 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
SRP54P61011 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.38■□□□□ 0.05
SRP54P61011 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
SRP54P61011 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.38■□□□□ 0.05
SRP54P61011 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.38■□□□□ 0.05
SRP54P61011 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.38■□□□□ 0.05
SRP54P61011 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.38■□□□□ 0.05
SRP54P61011 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 USP32P1-208ENST00000506594 1164 ntBASIC15.38■□□□□ 0.05
SRP54P61011 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.38■□□□□ 0.05
SRP54P61011 SLC25A47P1-201ENST00000531577 414 ntBASIC15.38■□□□□ 0.05
SRP54P61011 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.38■□□□□ 0.05
SRP54P61011 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.38■□□□□ 0.05
SRP54P61011 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.38■□□□□ 0.05
SRP54P61011 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SRP54P61011 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.38■□□□□ 0.05
SRP54P61011 ORC6-206ENST00000568364 888 ntTSL 5 BASIC15.38■□□□□ 0.05
SRP54P61011 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.38■□□□□ 0.05
SRP54P61011 MIR5189-201ENST00000577370 114 ntBASIC15.38■□□□□ 0.05
SRP54P61011 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms