Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.18■□□□□ 0.18
EPHB3P54753 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
EPHB3P54753 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
EPHB3P54753 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
EPHB3P54753 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.17■□□□□ 0.18
EPHB3P54753 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
EPHB3P54753 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.17■□□□□ 0.18
EPHB3P54753 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
EPHB3P54753 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.17■□□□□ 0.18
EPHB3P54753 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
EPHB3P54753 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.17■□□□□ 0.18
EPHB3P54753 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.17■□□□□ 0.18
EPHB3P54753 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.17■□□□□ 0.18
EPHB3P54753 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 AL645937.2-201ENST00000396808 931 ntBASIC16.17■□□□□ 0.18
EPHB3P54753 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
EPHB3P54753 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.17■□□□□ 0.18
EPHB3P54753 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.17■□□□□ 0.18
EPHB3P54753 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.17■□□□□ 0.18
EPHB3P54753 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.17■□□□□ 0.18
EPHB3P54753 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.17■□□□□ 0.18
EPHB3P54753 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.17■□□□□ 0.18
EPHB3P54753 RN7SL560P-201ENST00000577943 264 ntBASIC16.17■□□□□ 0.18
EPHB3P54753 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC16.17■□□□□ 0.18
EPHB3P54753 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
EPHB3P54753 LRRC59-203ENST00000576448 1531 ntBASIC16.17■□□□□ 0.18
EPHB3P54753 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
EPHB3P54753 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
EPHB3P54753 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 AC022188.1-201ENST00000620960 1664 ntBASIC16.17■□□□□ 0.18
EPHB3P54753 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.17■□□□□ 0.18
EPHB3P54753 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.17■□□□□ 0.18
EPHB3P54753 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 AHCYP2-201ENST00000430630 1300 ntBASIC16.17■□□□□ 0.18
EPHB3P54753 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
EPHB3P54753 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
EPHB3P54753 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.16■□□□□ 0.18
EPHB3P54753 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
EPHB3P54753 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.16■□□□□ 0.18
EPHB3P54753 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
EPHB3P54753 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.16■□□□□ 0.18
EPHB3P54753 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.16■□□□□ 0.18
EPHB3P54753 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
EPHB3P54753 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
EPHB3P54753 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.16■□□□□ 0.18
EPHB3P54753 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
EPHB3P54753 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
EPHB3P54753 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
EPHB3P54753 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC16.16■□□□□ 0.18
EPHB3P54753 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC16.16■□□□□ 0.18
EPHB3P54753 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC16.16■□□□□ 0.18
EPHB3P54753 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
EPHB3P54753 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
EPHB3P54753 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
EPHB3P54753 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.16■□□□□ 0.18
EPHB3P54753 USB1-203ENST00000539737 1212 ntTSL 2 BASIC16.16■□□□□ 0.18
EPHB3P54753 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC16.16■□□□□ 0.18
EPHB3P54753 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC16.16■□□□□ 0.18
EPHB3P54753 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.16■□□□□ 0.18
EPHB3P54753 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC16.16■□□□□ 0.18
EPHB3P54753 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.16■□□□□ 0.18
EPHB3P54753 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
EPHB3P54753 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.16■□□□□ 0.18
EPHB3P54753 PRSS30P-206ENST00000641773 873 ntBASIC16.16■□□□□ 0.18
EPHB3P54753 AC010491.1-201ENST00000563101 2797 ntBASIC16.16■□□□□ 0.18
EPHB3P54753 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.16■□□□□ 0.18
EPHB3P54753 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
EPHB3P54753 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
EPHB3P54753 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
EPHB3P54753 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
EPHB3P54753 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
EPHB3P54753 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.16■□□□□ 0.18
EPHB3P54753 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
EPHB3P54753 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
EPHB3P54753 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
EPHB3P54753 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
EPHB3P54753 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
EPHB3P54753 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms