Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 NKG7-204ENST00000595217 816 ntTSL 2 BASIC15.35■□□□□ 0.05
LIMK1P53667 AL096828.3-201ENST00000615354 462 ntBASIC15.35■□□□□ 0.05
LIMK1P53667 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.35■□□□□ 0.05
LIMK1P53667 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.35■□□□□ 0.05
LIMK1P53667 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.35■□□□□ 0.05
LIMK1P53667 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.35■□□□□ 0.05
LIMK1P53667 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.35■□□□□ 0.05
LIMK1P53667 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.35■□□□□ 0.05
LIMK1P53667 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.35■□□□□ 0.05
LIMK1P53667 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC15.35■□□□□ 0.05
LIMK1P53667 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.35■□□□□ 0.05
LIMK1P53667 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.34■□□□□ 0.05
LIMK1P53667 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
LIMK1P53667 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.34■□□□□ 0.05
LIMK1P53667 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.34■□□□□ 0.05
LIMK1P53667 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.34■□□□□ 0.05
LIMK1P53667 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 AL391256.1-201ENST00000443260 1855 ntBASIC15.34■□□□□ 0.05
LIMK1P53667 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.34■□□□□ 0.05
LIMK1P53667 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC15.34■□□□□ 0.05
LIMK1P53667 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.34■□□□□ 0.05
LIMK1P53667 AC026410.3-201ENST00000514280 936 ntBASIC15.34■□□□□ 0.05
LIMK1P53667 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC15.34■□□□□ 0.05
LIMK1P53667 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC15.34■□□□□ 0.05
LIMK1P53667 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.34■□□□□ 0.05
LIMK1P53667 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC15.34■□□□□ 0.05
LIMK1P53667 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.34■□□□□ 0.05
LIMK1P53667 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
LIMK1P53667 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.34■□□□□ 0.05
LIMK1P53667 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
LIMK1P53667 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.34■□□□□ 0.05
LIMK1P53667 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
LIMK1P53667 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
LIMK1P53667 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.34■□□□□ 0.05
LIMK1P53667 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIMK1P53667 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LIMK1P53667 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LIMK1P53667 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
LIMK1P53667 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LIMK1P53667 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LIMK1P53667 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
LIMK1P53667 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.33■□□□□ 0.05
LIMK1P53667 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
LIMK1P53667 ALOX12P2-203ENST00000570921 1945 ntBASIC15.33■□□□□ 0.05
LIMK1P53667 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LIMK1P53667 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIMK1P53667 AC099063.4-201ENST00000641099 1602 ntBASIC15.33■□□□□ 0.04
LIMK1P53667 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIMK1P53667 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIMK1P53667 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
LIMK1P53667 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIMK1P53667 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIMK1P53667 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LIMK1P53667 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIMK1P53667 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
LIMK1P53667 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC15.33■□□□□ 0.04
LIMK1P53667 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LIMK1P53667 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
LIMK1P53667 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC15.33■□□□□ 0.04
LIMK1P53667 AL008707.1-201ENST00000422498 534 ntBASIC15.33■□□□□ 0.04
LIMK1P53667 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIMK1P53667 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC15.33■□□□□ 0.04
LIMK1P53667 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.33■□□□□ 0.04
LIMK1P53667 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC15.33■□□□□ 0.04
LIMK1P53667 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.33■□□□□ 0.04
LIMK1P53667 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC15.33■□□□□ 0.04
LIMK1P53667 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.33■□□□□ 0.04
LIMK1P53667 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC15.33■□□□□ 0.04
LIMK1P53667 AL353726.2-201ENST00000623259 884 ntBASIC15.33■□□□□ 0.04
LIMK1P53667 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC15.33■□□□□ 0.04
LIMK1P53667 AC006453.4-201ENST00000636949 1252 ntBASIC15.33■□□□□ 0.04
LIMK1P53667 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.33■□□□□ 0.04
LIMK1P53667 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LIMK1P53667 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIMK1P53667 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms