Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AL109936.8-201ENST00000641772 604 ntBASIC16.09■□□□□ 0.17
NEK3P51956 AC105233.6-201ENST00000642093 218 ntBASIC16.09■□□□□ 0.17
NEK3P51956 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
NEK3P51956 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC16.09■□□□□ 0.17
NEK3P51956 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
NEK3P51956 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
NEK3P51956 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.09■□□□□ 0.17
NEK3P51956 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
NEK3P51956 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.09■□□□□ 0.17
NEK3P51956 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.09■□□□□ 0.17
NEK3P51956 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
NEK3P51956 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
NEK3P51956 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.09■□□□□ 0.17
NEK3P51956 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
NEK3P51956 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
NEK3P51956 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NEK3P51956 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC16.09■□□□□ 0.17
NEK3P51956 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
NEK3P51956 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NEK3P51956 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.08■□□□□ 0.17
NEK3P51956 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.08■□□□□ 0.17
NEK3P51956 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.17
NEK3P51956 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
NEK3P51956 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.08■□□□□ 0.17
NEK3P51956 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
NEK3P51956 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
NEK3P51956 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.08■□□□□ 0.17
NEK3P51956 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
NEK3P51956 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.08■□□□□ 0.16
NEK3P51956 HIST3H2BA-201ENST00000436555 524 ntBASIC16.08■□□□□ 0.16
NEK3P51956 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.08■□□□□ 0.16
NEK3P51956 EEF1DP4-201ENST00000446006 880 ntBASIC16.08■□□□□ 0.16
NEK3P51956 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
NEK3P51956 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.08■□□□□ 0.16
NEK3P51956 AL132655.2-201ENST00000596276 594 ntBASIC16.08■□□□□ 0.16
NEK3P51956 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 AC023908.3-201ENST00000564211 3047 ntBASIC16.08■□□□□ 0.16
NEK3P51956 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.08■□□□□ 0.16
NEK3P51956 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
NEK3P51956 KRT8P37-201ENST00000451609 1420 ntBASIC16.08■□□□□ 0.16
NEK3P51956 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 AP001282.1-201ENST00000531301 1499 ntBASIC16.08■□□□□ 0.16
NEK3P51956 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.08■□□□□ 0.16
NEK3P51956 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.08■□□□□ 0.16
NEK3P51956 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
NEK3P51956 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
NEK3P51956 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NEK3P51956 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.07■□□□□ 0.16
NEK3P51956 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.07■□□□□ 0.16
NEK3P51956 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.07■□□□□ 0.16
NEK3P51956 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
NEK3P51956 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
NEK3P51956 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
NEK3P51956 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
NEK3P51956 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
NEK3P51956 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.07■□□□□ 0.16
NEK3P51956 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.07■□□□□ 0.16
NEK3P51956 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.07■□□□□ 0.16
NEK3P51956 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
NEK3P51956 DOC2GP-202ENST00000514950 1163 ntBASIC16.07■□□□□ 0.16
NEK3P51956 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
NEK3P51956 SPDYE22P-201ENST00000582158 798 ntBASIC16.07■□□□□ 0.16
NEK3P51956 AC025048.3-201ENST00000590609 569 ntBASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms