Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 UFM1-202ENST00000379649 846 ntTSL 4 BASIC15.31■□□□□ 0.04
CXCL12P48061 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 AC069218.1-201ENST00000435269 762 ntBASIC15.31■□□□□ 0.04
CXCL12P48061 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC15.31■□□□□ 0.04
CXCL12P48061 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC15.31■□□□□ 0.04
CXCL12P48061 AC234782.1-201ENST00000451950 919 ntBASIC15.31■□□□□ 0.04
CXCL12P48061 AC104073.2-201ENST00000453737 312 ntBASIC15.31■□□□□ 0.04
CXCL12P48061 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC15.31■□□□□ 0.04
CXCL12P48061 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.31■□□□□ 0.04
CXCL12P48061 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC15.31■□□□□ 0.04
CXCL12P48061 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CXCL12P48061 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CXCL12P48061 AC022188.1-201ENST00000620960 1664 ntBASIC15.31■□□□□ 0.04
CXCL12P48061 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL12P48061 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.31■□□□□ 0.04
CXCL12P48061 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
CXCL12P48061 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL12P48061 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL12P48061 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL12P48061 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL12P48061 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CXCL12P48061 NPPA-201ENST00000376476 728 ntTSL 3 BASIC15.3■□□□□ 0.04
CXCL12P48061 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL12P48061 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL12P48061 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL12P48061 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CXCL12P48061 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL12P48061 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL12P48061 SLC16A6P1-201ENST00000413214 1059 ntBASIC15.3■□□□□ 0.04
CXCL12P48061 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.3■□□□□ 0.04
CXCL12P48061 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
CXCL12P48061 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC15.3■□□□□ 0.04
CXCL12P48061 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC15.3■□□□□ 0.04
CXCL12P48061 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC15.3■□□□□ 0.04
CXCL12P48061 AL157791.1-201ENST00000553667 1699 ntBASIC15.3■□□□□ 0.04
CXCL12P48061 MIR3147-201ENST00000577811 66 ntBASIC15.3■□□□□ 0.04
CXCL12P48061 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL12P48061 MIR4750-201ENST00000584564 56 ntBASIC15.3■□□□□ 0.04
CXCL12P48061 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC15.3■□□□□ 0.04
CXCL12P48061 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
CXCL12P48061 AL136295.7-201ENST00000619226 1200 ntBASIC15.3■□□□□ 0.04
CXCL12P48061 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
CXCL12P48061 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CXCL12P48061 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL12P48061 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL12P48061 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CXCL12P48061 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL12P48061 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL12P48061 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CXCL12P48061 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.29■□□□□ 0.04
CXCL12P48061 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.29■□□□□ 0.04
CXCL12P48061 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL12P48061 AC004899.1-201ENST00000424687 1714 ntBASIC15.29■□□□□ 0.04
CXCL12P48061 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.29■□□□□ 0.04
CXCL12P48061 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.29■□□□□ 0.04
CXCL12P48061 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL12P48061 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL12P48061 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.29■□□□□ 0.04
CXCL12P48061 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL12P48061 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL12P48061 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CXCL12P48061 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CXCL12P48061 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
CXCL12P48061 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC15.29■□□□□ 0.04
CXCL12P48061 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CXCL12P48061 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL12P48061 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL12P48061 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC15.29■□□□□ 0.04
CXCL12P48061 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC15.29■□□□□ 0.04
CXCL12P48061 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL12P48061 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC15.29■□□□□ 0.04
CXCL12P48061 PARVG-202ENST00000415224 999 ntTSL 2 BASIC15.29■□□□□ 0.04
CXCL12P48061 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC15.29■□□□□ 0.04
CXCL12P48061 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC15.29■□□□□ 0.04
CXCL12P48061 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC15.29■□□□□ 0.04
CXCL12P48061 IQSEC3P1-201ENST00000538799 536 ntBASIC15.29■□□□□ 0.04
CXCL12P48061 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.29■□□□□ 0.04
CXCL12P48061 CSH2-206ENST00000560142 749 ntTSL 5 BASIC15.29■□□□□ 0.04
CXCL12P48061 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC15.29■□□□□ 0.04
CXCL12P48061 AP000346.4-201ENST00000614827 381 ntBASIC15.29■□□□□ 0.04
CXCL12P48061 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.29■□□□□ 0.04
CXCL12P48061 AC138466.3-201ENST00000619983 221 ntBASIC15.29■□□□□ 0.04
CXCL12P48061 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL12P48061 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL12P48061 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CXCL12P48061 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL12P48061 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL12P48061 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
CXCL12P48061 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.29■□□□□ 0.04
CXCL12P48061 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.29■□□□□ 0.04
CXCL12P48061 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.29■□□□□ 0.04
CXCL12P48061 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CXCL12P48061 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms