Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
MSX2P35548 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.94□□□□□ -0.02
MSX2P35548 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.93□□□□□ -0.02
MSX2P35548 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 NARF-206ENST00000457415 1668 ntTSL 5 BASIC14.93□□□□□ -0.02
MSX2P35548 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.93□□□□□ -0.02
MSX2P35548 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.93□□□□□ -0.02
MSX2P35548 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.93□□□□□ -0.02
MSX2P35548 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC14.93□□□□□ -0.02
MSX2P35548 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 AP001267.2-201ENST00000532619 2086 ntBASIC14.93□□□□□ -0.02
MSX2P35548 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.93□□□□□ -0.02
MSX2P35548 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
MSX2P35548 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 AL136982.4-201ENST00000437689 1740 ntBASIC14.93□□□□□ -0.02
MSX2P35548 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
MSX2P35548 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
MSX2P35548 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
MSX2P35548 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC14.93□□□□□ -0.02
MSX2P35548 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC14.93□□□□□ -0.02
MSX2P35548 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
MSX2P35548 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC14.93□□□□□ -0.02
MSX2P35548 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
MSX2P35548 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.93□□□□□ -0.02
MSX2P35548 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
MSX2P35548 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.93□□□□□ -0.02
MSX2P35548 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
MSX2P35548 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC14.93□□□□□ -0.02
MSX2P35548 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
MSX2P35548 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
MSX2P35548 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
MSX2P35548 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.92□□□□□ -0.02
MSX2P35548 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.92□□□□□ -0.02
MSX2P35548 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
MSX2P35548 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
MSX2P35548 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.92□□□□□ -0.02
MSX2P35548 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC14.92□□□□□ -0.02
MSX2P35548 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC14.92□□□□□ -0.02
MSX2P35548 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC14.92□□□□□ -0.02
MSX2P35548 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.92□□□□□ -0.02
MSX2P35548 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
MSX2P35548 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.92□□□□□ -0.02
MSX2P35548 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.92□□□□□ -0.02
MSX2P35548 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
MSX2P35548 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC14.92□□□□□ -0.02
MSX2P35548 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.92□□□□□ -0.02
MSX2P35548 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.92□□□□□ -0.02
MSX2P35548 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC14.92□□□□□ -0.02
MSX2P35548 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.92□□□□□ -0.02
MSX2P35548 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.92□□□□□ -0.02
MSX2P35548 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX2P35548 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.91□□□□□ -0.02
MSX2P35548 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms