Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 AC004449.1-201ENST00000564240 433 ntBASIC11.94□□□□□ -0.5
HLA-DMBP28068 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 METTL23-205ENST00000588302 925 ntTSL 5 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 AC097359.3-201ENST00000603982 1210 ntBASIC11.94□□□□□ -0.5
HLA-DMBP28068 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 HADH-212ENST00000638621 741 ntTSL 5 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 NME4-207ENST00000450036 985 ntTSL 3 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 KRT8P23-201ENST00000560090 1207 ntBASIC11.93□□□□□ -0.5
HLA-DMBP28068 RARRES2P9-201ENST00000565168 469 ntBASIC11.93□□□□□ -0.5
HLA-DMBP28068 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
HLA-DMBP28068 SNX18-202ENST00000343017 3140 ntBASIC11.93□□□□□ -0.5
HLA-DMBP28068 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HLA-DMBP28068 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 GOLGA6L17P-202ENST00000614358 1398 ntBASIC11.92□□□□□ -0.5
HLA-DMBP28068 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 C8orf49-201ENST00000525043 1968 ntBASIC11.92□□□□□ -0.5
HLA-DMBP28068 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms