Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 FOS-202ENST00000535987 1402 ntTSL 2 BASIC13.58□□□□□ -0.24
COL8A1P27658 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC13.58□□□□□ -0.24
COL8A1P27658 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
COL8A1P27658 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
COL8A1P27658 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC13.58□□□□□ -0.24
COL8A1P27658 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC13.58□□□□□ -0.24
COL8A1P27658 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.58□□□□□ -0.24
COL8A1P27658 ACTG1P2-201ENST00000415776 1125 ntBASIC13.58□□□□□ -0.24
COL8A1P27658 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.58□□□□□ -0.24
COL8A1P27658 ACTG1P11-201ENST00000425411 1125 ntBASIC13.58□□□□□ -0.24
COL8A1P27658 CNN2P10-201ENST00000443067 918 ntBASIC13.58□□□□□ -0.24
COL8A1P27658 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 SLED1-202ENST00000512051 380 ntBASIC13.58□□□□□ -0.24
COL8A1P27658 AC026410.3-201ENST00000514280 936 ntBASIC13.58□□□□□ -0.24
COL8A1P27658 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC13.58□□□□□ -0.24
COL8A1P27658 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC13.58□□□□□ -0.24
COL8A1P27658 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
COL8A1P27658 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC13.58□□□□□ -0.24
COL8A1P27658 AC073352.2-201ENST00000609385 439 ntBASIC13.58□□□□□ -0.24
COL8A1P27658 AC009084.3-201ENST00000623356 437 ntBASIC13.58□□□□□ -0.24
COL8A1P27658 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 AC018695.7-201ENST00000624587 2492 ntBASIC13.58□□□□□ -0.24
COL8A1P27658 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.24
COL8A1P27658 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC13.58□□□□□ -0.24
COL8A1P27658 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.58□□□□□ -0.24
COL8A1P27658 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 CROCCP2-202ENST00000412962 2773 ntBASIC13.58□□□□□ -0.24
COL8A1P27658 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
COL8A1P27658 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC13.58□□□□□ -0.24
COL8A1P27658 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL8A1P27658 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC13.57□□□□□ -0.24
COL8A1P27658 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.57□□□□□ -0.24
COL8A1P27658 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
COL8A1P27658 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
COL8A1P27658 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 PCGF3-213ENST00000620529 1899 ntBASIC13.57□□□□□ -0.24
COL8A1P27658 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
COL8A1P27658 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
COL8A1P27658 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC13.57□□□□□ -0.24
COL8A1P27658 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 BOC-212ENST00000485230 2173 ntTSL 2 BASIC13.57□□□□□ -0.24
COL8A1P27658 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
COL8A1P27658 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 CRCP-204ENST00000398684 492 ntTSL 2 BASIC13.57□□□□□ -0.24
COL8A1P27658 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC13.57□□□□□ -0.24
COL8A1P27658 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 AC092473.1-201ENST00000441098 221 ntBASIC13.57□□□□□ -0.24
COL8A1P27658 MTND4LP12-201ENST00000448237 295 ntBASIC13.57□□□□□ -0.24
COL8A1P27658 AC125604.1-201ENST00000496255 707 ntBASIC13.57□□□□□ -0.24
COL8A1P27658 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.57□□□□□ -0.24
COL8A1P27658 TBCB-211ENST00000589996 724 ntTSL 3 BASIC13.57□□□□□ -0.24
COL8A1P27658 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC13.57□□□□□ -0.24
COL8A1P27658 AC011491.1-203ENST00000637688 543 ntBASIC13.57□□□□□ -0.24
COL8A1P27658 AL139011.1-202ENST00000642063 584 ntBASIC13.57□□□□□ -0.24
COL8A1P27658 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.57□□□□□ -0.24
COL8A1P27658 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC13.57□□□□□ -0.24
COL8A1P27658 KRT8P35-201ENST00000483942 1338 ntBASIC13.57□□□□□ -0.24
COL8A1P27658 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
COL8A1P27658 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC13.57□□□□□ -0.24
COL8A1P27658 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC13.57□□□□□ -0.24
COL8A1P27658 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
COL8A1P27658 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.57□□□□□ -0.24
COL8A1P27658 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC13.57□□□□□ -0.24
COL8A1P27658 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL8A1P27658 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
COL8A1P27658 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms