Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
VCANP13611 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.72■□□□□ 0.11
VCANP13611 FAM90A7P-201ENST00000382628 1395 ntBASIC15.72■□□□□ 0.11
VCANP13611 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 FAM90A23P-201ENST00000400136 1395 ntBASIC15.72■□□□□ 0.11
VCANP13611 FAM90A21P-201ENST00000510875 1396 ntBASIC15.72■□□□□ 0.11
VCANP13611 FAM90A15P-201ENST00000514465 1395 ntBASIC15.72■□□□□ 0.11
VCANP13611 FAM90A6P-201ENST00000515148 1394 ntBASIC15.72■□□□□ 0.11
VCANP13611 FAM90A16P-201ENST00000526662 1395 ntBASIC15.72■□□□□ 0.11
VCANP13611 FAM90A9P-201ENST00000527940 1395 ntBASIC15.72■□□□□ 0.11
VCANP13611 FAM90A5P-201ENST00000528738 1395 ntBASIC15.72■□□□□ 0.11
VCANP13611 FAM90A14P-201ENST00000530386 1395 ntBASIC15.72■□□□□ 0.11
VCANP13611 FAM90A13P-201ENST00000534703 1395 ntBASIC15.72■□□□□ 0.11
VCANP13611 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.72■□□□□ 0.11
VCANP13611 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
VCANP13611 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.72■□□□□ 0.11
VCANP13611 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.72■□□□□ 0.11
VCANP13611 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
VCANP13611 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC15.72■□□□□ 0.11
VCANP13611 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC15.72■□□□□ 0.11
VCANP13611 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC15.72■□□□□ 0.11
VCANP13611 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VCANP13611 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VCANP13611 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VCANP13611 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
VCANP13611 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.71■□□□□ 0.11
VCANP13611 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC15.71■□□□□ 0.11
VCANP13611 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VCANP13611 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.71■□□□□ 0.11
VCANP13611 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VCANP13611 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VCANP13611 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VCANP13611 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VCANP13611 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VCANP13611 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VCANP13611 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VCANP13611 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VCANP13611 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.71■□□□□ 0.11
VCANP13611 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
VCANP13611 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.71■□□□□ 0.11
VCANP13611 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
VCANP13611 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC15.71■□□□□ 0.11
VCANP13611 AC106820.3-201ENST00000561653 397 ntBASIC15.71■□□□□ 0.11
VCANP13611 LTB4R2-202ENST00000528054 3092 ntBASIC15.71■□□□□ 0.11
VCANP13611 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VCANP13611 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VCANP13611 E2F3P2-201ENST00000447755 1422 ntBASIC15.71■□□□□ 0.11
VCANP13611 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
VCANP13611 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
VCANP13611 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VCANP13611 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
VCANP13611 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.1
VCANP13611 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VCANP13611 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 BX088651.3-201ENST00000418155 352 ntBASIC15.7■□□□□ 0.1
VCANP13611 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC15.7■□□□□ 0.1
VCANP13611 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC15.7■□□□□ 0.1
VCANP13611 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC15.7■□□□□ 0.1
VCANP13611 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 AC020910.5-201ENST00000623668 1865 ntBASIC15.7■□□□□ 0.1
VCANP13611 AL157414.3-201ENST00000624276 1954 ntBASIC15.7■□□□□ 0.1
VCANP13611 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
VCANP13611 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
VCANP13611 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VCANP13611 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 BAK1P1-201ENST00000317045 636 ntBASIC15.7■□□□□ 0.1
VCANP13611 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 ABHD17AP9-201ENST00000561925 548 ntBASIC15.7■□□□□ 0.1
VCANP13611 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.7■□□□□ 0.1
VCANP13611 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.7■□□□□ 0.1
VCANP13611 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
VCANP13611 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VCANP13611 RBPMSLP-201ENST00000433427 502 ntBASIC15.7■□□□□ 0.1
VCANP13611 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.7■□□□□ 0.1
VCANP13611 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.7■□□□□ 0.1
VCANP13611 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VCANP13611 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC15.69■□□□□ 0.1
VCANP13611 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VCANP13611 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms