Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.36■□□□□ 0.21
APOEP02649 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 DFFBP1-201ENST00000433250 979 ntBASIC16.36■□□□□ 0.21
APOEP02649 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.36■□□□□ 0.21
APOEP02649 AL589987.1-201ENST00000453380 819 ntBASIC16.36■□□□□ 0.21
APOEP02649 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.36■□□□□ 0.21
APOEP02649 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 AC055876.2-201ENST00000531834 546 ntBASIC16.36■□□□□ 0.21
APOEP02649 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.36■□□□□ 0.21
APOEP02649 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
APOEP02649 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.36■□□□□ 0.21
APOEP02649 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.36■□□□□ 0.21
APOEP02649 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
APOEP02649 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.36■□□□□ 0.21
APOEP02649 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
APOEP02649 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.36■□□□□ 0.21
APOEP02649 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.36■□□□□ 0.21
APOEP02649 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.36■□□□□ 0.21
APOEP02649 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC16.36■□□□□ 0.21
APOEP02649 AC007541.1-201ENST00000570282 1469 ntBASIC16.35■□□□□ 0.21
APOEP02649 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.35■□□□□ 0.21
APOEP02649 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
APOEP02649 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.35■□□□□ 0.21
APOEP02649 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.35■□□□□ 0.21
APOEP02649 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
APOEP02649 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
APOEP02649 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.35■□□□□ 0.21
APOEP02649 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.35■□□□□ 0.21
APOEP02649 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.35■□□□□ 0.21
APOEP02649 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.35■□□□□ 0.21
APOEP02649 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.35■□□□□ 0.21
APOEP02649 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.35■□□□□ 0.21
APOEP02649 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.35■□□□□ 0.21
APOEP02649 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.35■□□□□ 0.21
APOEP02649 AC004790.1-201ENST00000612686 536 ntBASIC16.35■□□□□ 0.21
APOEP02649 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
APOEP02649 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.35■□□□□ 0.21
APOEP02649 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.35■□□□□ 0.21
APOEP02649 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
APOEP02649 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.35■□□□□ 0.21
APOEP02649 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.35■□□□□ 0.21
APOEP02649 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.35■□□□□ 0.21
APOEP02649 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
APOEP02649 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.34■□□□□ 0.21
APOEP02649 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.34■□□□□ 0.21
APOEP02649 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.34■□□□□ 0.21
APOEP02649 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.34■□□□□ 0.21
APOEP02649 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 AC136621.1-201ENST00000624017 2304 ntBASIC16.34■□□□□ 0.21
APOEP02649 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
APOEP02649 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.34■□□□□ 0.21
APOEP02649 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.34■□□□□ 0.21
APOEP02649 AC087499.6-201ENST00000411576 835 ntBASIC16.34■□□□□ 0.21
APOEP02649 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms