Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC17.82■□□□□ 0.44
COL2A1P02458 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC17.82■□□□□ 0.44
COL2A1P02458 BNIP3P13-201ENST00000599968 566 ntBASIC17.82■□□□□ 0.44
COL2A1P02458 MIR6727-201ENST00000620702 65 ntBASIC17.82■□□□□ 0.44
COL2A1P02458 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL2A1P02458 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
COL2A1P02458 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
COL2A1P02458 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.82■□□□□ 0.44
COL2A1P02458 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.82■□□□□ 0.44
COL2A1P02458 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL2A1P02458 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.82■□□□□ 0.44
COL2A1P02458 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL2A1P02458 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL2A1P02458 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL2A1P02458 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL2A1P02458 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
COL2A1P02458 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
COL2A1P02458 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL2A1P02458 AL137783.1-201ENST00000623494 1896 ntBASIC17.82■□□□□ 0.44
COL2A1P02458 AC020658.6-201ENST00000623564 1870 ntBASIC17.82■□□□□ 0.44
COL2A1P02458 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
COL2A1P02458 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL2A1P02458 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
COL2A1P02458 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
COL2A1P02458 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL2A1P02458 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL2A1P02458 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
COL2A1P02458 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC17.82■□□□□ 0.44
COL2A1P02458 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL2A1P02458 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC17.82■□□□□ 0.44
COL2A1P02458 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC17.82■□□□□ 0.44
COL2A1P02458 AC005077.2-201ENST00000449786 690 ntBASIC17.82■□□□□ 0.44
COL2A1P02458 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL2A1P02458 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL2A1P02458 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL2A1P02458 AL162426.1-201ENST00000624141 743 ntBASIC17.82■□□□□ 0.44
COL2A1P02458 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.82■□□□□ 0.44
COL2A1P02458 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.81■□□□□ 0.44
COL2A1P02458 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.81■□□□□ 0.44
COL2A1P02458 CICP11-201ENST00000434745 2827 ntBASIC17.81■□□□□ 0.44
COL2A1P02458 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC17.81■□□□□ 0.44
COL2A1P02458 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL2A1P02458 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
COL2A1P02458 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL2A1P02458 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL2A1P02458 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL2A1P02458 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.81■□□□□ 0.44
COL2A1P02458 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
COL2A1P02458 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.81■□□□□ 0.44
COL2A1P02458 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL2A1P02458 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
COL2A1P02458 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL2A1P02458 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL2A1P02458 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL2A1P02458 FNTAP2-201ENST00000430308 634 ntBASIC17.81■□□□□ 0.44
COL2A1P02458 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC17.81■□□□□ 0.44
COL2A1P02458 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL2A1P02458 ALG3P1-201ENST00000508806 1114 ntBASIC17.81■□□□□ 0.44
COL2A1P02458 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC17.81■□□□□ 0.44
COL2A1P02458 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC17.81■□□□□ 0.44
COL2A1P02458 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL2A1P02458 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC17.81■□□□□ 0.44
COL2A1P02458 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.81■□□□□ 0.44
COL2A1P02458 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL2A1P02458 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL2A1P02458 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL2A1P02458 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL2A1P02458 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL2A1P02458 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL2A1P02458 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL2A1P02458 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL2A1P02458 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.8■□□□□ 0.44
COL2A1P02458 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL2A1P02458 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
COL2A1P02458 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
COL2A1P02458 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
COL2A1P02458 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
COL2A1P02458 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL2A1P02458 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL2A1P02458 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL2A1P02458 TLE1P1-201ENST00000422965 589 ntBASIC17.8■□□□□ 0.44
COL2A1P02458 TSACC-208ENST00000481479 741 ntTSL 2 BASIC17.8■□□□□ 0.44
COL2A1P02458 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC17.8■□□□□ 0.44
COL2A1P02458 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC17.8■□□□□ 0.44
COL2A1P02458 CHMP4BP1-201ENST00000556017 588 ntBASIC17.8■□□□□ 0.44
COL2A1P02458 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC17.8■□□□□ 0.44
COL2A1P02458 AC105129.2-201ENST00000559536 390 ntBASIC17.8■□□□□ 0.44
COL2A1P02458 SYT17-208ENST00000568433 812 ntTSL 3 BASIC17.8■□□□□ 0.44
COL2A1P02458 AC005324.6-201ENST00000587972 613 ntBASIC17.8■□□□□ 0.44
COL2A1P02458 AC132192.2-201ENST00000596206 1147 ntBASIC17.8■□□□□ 0.44
COL2A1P02458 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL2A1P02458 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL2A1P02458 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL2A1P02458 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL2A1P02458 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.8■□□□□ 0.44
COL2A1P02458 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL2A1P02458 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL2A1P02458 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL2A1P02458 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL2A1P02458 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms