Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
ZIC3O60481 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
ZIC3O60481 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ZIC3O60481 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
ZIC3O60481 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
ZIC3O60481 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ZIC3O60481 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ZIC3O60481 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ZIC3O60481 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ZIC3O60481 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC13.95□□□□□ -0.18
ZIC3O60481 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC13.95□□□□□ -0.18
ZIC3O60481 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.95□□□□□ -0.18
ZIC3O60481 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
ZIC3O60481 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC13.95□□□□□ -0.18
ZIC3O60481 AP001582.1-201ENST00000525856 295 ntBASIC13.95□□□□□ -0.18
ZIC3O60481 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
ZIC3O60481 MIR5189-201ENST00000577370 114 ntBASIC13.95□□□□□ -0.18
ZIC3O60481 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.95□□□□□ -0.18
ZIC3O60481 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.95□□□□□ -0.18
ZIC3O60481 AC008735.3-201ENST00000596646 500 ntBASIC13.95□□□□□ -0.18
ZIC3O60481 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
ZIC3O60481 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ZIC3O60481 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.95□□□□□ -0.18
ZIC3O60481 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
ZIC3O60481 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
ZIC3O60481 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
ZIC3O60481 AC007787.1-201ENST00000588095 1583 ntBASIC13.95□□□□□ -0.18
ZIC3O60481 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
ZIC3O60481 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC13.95□□□□□ -0.18
ZIC3O60481 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.95□□□□□ -0.18
ZIC3O60481 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ZIC3O60481 CICP11-201ENST00000434745 2827 ntBASIC13.95□□□□□ -0.18
ZIC3O60481 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
ZIC3O60481 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
ZIC3O60481 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC13.94□□□□□ -0.18
ZIC3O60481 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
ZIC3O60481 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC13.94□□□□□ -0.18
ZIC3O60481 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
ZIC3O60481 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
ZIC3O60481 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
ZIC3O60481 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
ZIC3O60481 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.94□□□□□ -0.18
ZIC3O60481 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.94□□□□□ -0.18
ZIC3O60481 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.94□□□□□ -0.18
ZIC3O60481 TMEM14DP-201ENST00000422205 345 ntBASIC13.94□□□□□ -0.18
ZIC3O60481 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC13.94□□□□□ -0.18
ZIC3O60481 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
ZIC3O60481 AC004066.1-201ENST00000502488 802 ntBASIC13.94□□□□□ -0.18
ZIC3O60481 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.94□□□□□ -0.18
ZIC3O60481 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
ZIC3O60481 SLC25A47P1-201ENST00000531577 414 ntBASIC13.94□□□□□ -0.18
ZIC3O60481 TDH-203ENST00000531764 1110 ntBASIC13.94□□□□□ -0.18
ZIC3O60481 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC13.94□□□□□ -0.18
ZIC3O60481 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC13.94□□□□□ -0.18
ZIC3O60481 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.94□□□□□ -0.18
ZIC3O60481 AC009486.1-201ENST00000569860 813 ntBASIC13.94□□□□□ -0.18
ZIC3O60481 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.94□□□□□ -0.18
ZIC3O60481 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
ZIC3O60481 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.94□□□□□ -0.18
ZIC3O60481 AC015936.2-201ENST00000593177 259 ntBASIC13.94□□□□□ -0.18
ZIC3O60481 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.94□□□□□ -0.18
ZIC3O60481 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 METTL26-214ENST00000614890 801 ntTSL 3 BASIC13.94□□□□□ -0.18
ZIC3O60481 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC13.94□□□□□ -0.18
ZIC3O60481 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ZIC3O60481 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.94□□□□□ -0.18
ZIC3O60481 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.93□□□□□ -0.18
ZIC3O60481 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ZIC3O60481 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.93□□□□□ -0.18
ZIC3O60481 AC093525.8-201ENST00000624099 1342 ntBASIC13.93□□□□□ -0.18
ZIC3O60481 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ZIC3O60481 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms