Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.5■□□□□ 0.39
CHMP2AO43633 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CHMP2AO43633 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 AC084364.1-201ENST00000551967 1556 ntBASIC17.49■□□□□ 0.39
CHMP2AO43633 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC17.49■□□□□ 0.39
CHMP2AO43633 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.49■□□□□ 0.39
CHMP2AO43633 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CHMP2AO43633 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.49■□□□□ 0.39
CHMP2AO43633 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.49■□□□□ 0.39
CHMP2AO43633 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CHMP2AO43633 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 C1QBPP1-201ENST00000400117 770 ntBASIC17.49■□□□□ 0.39
CHMP2AO43633 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.49■□□□□ 0.39
CHMP2AO43633 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.49■□□□□ 0.39
CHMP2AO43633 RPL13AP25-201ENST00000484130 612 ntBASIC17.49■□□□□ 0.39
CHMP2AO43633 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.49■□□□□ 0.39
CHMP2AO43633 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC17.49■□□□□ 0.39
CHMP2AO43633 AC120045.2-201ENST00000567334 178 ntBASIC17.49■□□□□ 0.39
CHMP2AO43633 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.49■□□□□ 0.39
CHMP2AO43633 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CHMP2AO43633 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CHMP2AO43633 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.49■□□□□ 0.39
CHMP2AO43633 CU634019.7-201ENST00000624153 1185 ntBASIC17.49■□□□□ 0.39
CHMP2AO43633 FP236241.2-201ENST00000624906 1185 ntBASIC17.49■□□□□ 0.39
CHMP2AO43633 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.49■□□□□ 0.39
CHMP2AO43633 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.49■□□□□ 0.39
CHMP2AO43633 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP2AO43633 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.49■□□□□ 0.39
CHMP2AO43633 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CHMP2AO43633 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 AC063926.2-201ENST00000623766 1308 ntBASIC17.48■□□□□ 0.39
CHMP2AO43633 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC17.48■□□□□ 0.39
CHMP2AO43633 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CHMP2AO43633 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CHMP2AO43633 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC17.48■□□□□ 0.39
CHMP2AO43633 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC17.48■□□□□ 0.39
CHMP2AO43633 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
CHMP2AO43633 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CHMP2AO43633 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CHMP2AO43633 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC17.48■□□□□ 0.39
CHMP2AO43633 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.48■□□□□ 0.39
CHMP2AO43633 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.48■□□□□ 0.39
CHMP2AO43633 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.48■□□□□ 0.39
CHMP2AO43633 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.48■□□□□ 0.39
CHMP2AO43633 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC17.48■□□□□ 0.39
CHMP2AO43633 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CHMP2AO43633 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.48■□□□□ 0.39
CHMP2AO43633 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
CHMP2AO43633 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
CHMP2AO43633 AC124283.3-201ENST00000570869 594 ntBASIC17.48■□□□□ 0.39
CHMP2AO43633 AC025181.2-201ENST00000606994 802 ntBASIC17.48■□□□□ 0.39
CHMP2AO43633 AC107373.2-201ENST00000607735 490 ntBASIC17.48■□□□□ 0.39
CHMP2AO43633 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.48■□□□□ 0.39
CHMP2AO43633 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC17.48■□□□□ 0.39
CHMP2AO43633 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.48■□□□□ 0.39
CHMP2AO43633 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.48■□□□□ 0.39
CHMP2AO43633 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CHMP2AO43633 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.48■□□□□ 0.39
CHMP2AO43633 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP2AO43633 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.48■□□□□ 0.39
CHMP2AO43633 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP2AO43633 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC17.47■□□□□ 0.39
CHMP2AO43633 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP2AO43633 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CHMP2AO43633 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms