Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 VDAC1P7-201ENST00000462417 847 ntBASIC15.67■□□□□ 0.1
DKK3Q9UBP4 RN7SL837P-201ENST00000463010 287 ntBASIC15.67■□□□□ 0.1
DKK3Q9UBP4 ENPP7P5-201ENST00000541031 1031 ntBASIC15.67■□□□□ 0.1
DKK3Q9UBP4 AL359711.2-201ENST00000563105 872 ntBASIC15.67■□□□□ 0.1
DKK3Q9UBP4 AC120045.2-201ENST00000567334 178 ntBASIC15.67■□□□□ 0.1
DKK3Q9UBP4 AC124283.3-201ENST00000570869 594 ntBASIC15.67■□□□□ 0.1
DKK3Q9UBP4 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 IGHV3-72-202ENST00000621503 303 ntBASIC15.67■□□□□ 0.1
DKK3Q9UBP4 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 LINC02199-201ENST00000506655 2702 ntBASIC15.67■□□□□ 0.1
DKK3Q9UBP4 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 KRT8P22-201ENST00000562317 1415 ntBASIC15.67■□□□□ 0.1
DKK3Q9UBP4 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
DKK3Q9UBP4 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 AC127383.1-201ENST00000444697 1800 ntBASIC15.66■□□□□ 0.1
DKK3Q9UBP4 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 SOCS2P1-201ENST00000417727 557 ntBASIC15.66■□□□□ 0.1
DKK3Q9UBP4 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 GAPDHP40-201ENST00000505218 1006 ntBASIC15.66■□□□□ 0.1
DKK3Q9UBP4 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 DRD5P1-201ENST00000456605 1438 ntBASIC15.66■□□□□ 0.1
DKK3Q9UBP4 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
DKK3Q9UBP4 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 AC007389.4-201ENST00000454674 793 ntBASIC15.65■□□□□ 0.1
DKK3Q9UBP4 GIMAP3P-201ENST00000495150 836 ntBASIC15.65■□□□□ 0.1
DKK3Q9UBP4 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 AC093813.1-201ENST00000605066 256 ntBASIC15.65■□□□□ 0.1
DKK3Q9UBP4 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DKK3Q9UBP4 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.64■□□□□ 0.09
DKK3Q9UBP4 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
DKK3Q9UBP4 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.64■□□□□ 0.09
DKK3Q9UBP4 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
DKK3Q9UBP4 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
DKK3Q9UBP4 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
DKK3Q9UBP4 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
DKK3Q9UBP4 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
DKK3Q9UBP4 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms