Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC13.87□□□□□ -0.19
MMP28Q9H239 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
MMP28Q9H239 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 AL122018.1-201ENST00000446607 2310 ntBASIC13.87□□□□□ -0.19
MMP28Q9H239 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 AP002414.3-201ENST00000589352 1468 ntBASIC13.87□□□□□ -0.19
MMP28Q9H239 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC13.87□□□□□ -0.19
MMP28Q9H239 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
MMP28Q9H239 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
MMP28Q9H239 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 AC005562.1-201ENST00000583030 3219 ntBASIC13.87□□□□□ -0.19
MMP28Q9H239 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC13.87□□□□□ -0.19
MMP28Q9H239 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC13.87□□□□□ -0.19
MMP28Q9H239 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 RPL13AP23-201ENST00000480739 586 ntBASIC13.87□□□□□ -0.19
MMP28Q9H239 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC13.87□□□□□ -0.19
MMP28Q9H239 AC106730.1-201ENST00000566722 1090 ntBASIC13.87□□□□□ -0.19
MMP28Q9H239 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC13.87□□□□□ -0.19
MMP28Q9H239 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 HSPA7-201ENST00000445535 1927 ntBASIC13.87□□□□□ -0.19
MMP28Q9H239 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
MMP28Q9H239 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC13.87□□□□□ -0.19
MMP28Q9H239 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 AL356585.2-201ENST00000625078 2396 ntBASIC13.87□□□□□ -0.19
MMP28Q9H239 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC13.87□□□□□ -0.19
MMP28Q9H239 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MMP28Q9H239 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
MMP28Q9H239 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC13.87□□□□□ -0.19
MMP28Q9H239 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC13.87□□□□□ -0.19
MMP28Q9H239 GALC-206ENST00000544807 2528 ntTSL 2 BASIC13.87□□□□□ -0.19
MMP28Q9H239 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
MMP28Q9H239 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.87□□□□□ -0.19
MMP28Q9H239 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
MMP28Q9H239 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
MMP28Q9H239 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
MMP28Q9H239 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.86□□□□□ -0.19
MMP28Q9H239 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
MMP28Q9H239 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.86□□□□□ -0.19
MMP28Q9H239 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
MMP28Q9H239 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
MMP28Q9H239 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC13.86□□□□□ -0.19
MMP28Q9H239 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
MMP28Q9H239 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC13.86□□□□□ -0.19
MMP28Q9H239 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC13.86□□□□□ -0.19
MMP28Q9H239 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC13.86□□□□□ -0.19
MMP28Q9H239 AC092910.1-201ENST00000482027 1129 ntBASIC13.86□□□□□ -0.19
MMP28Q9H239 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC13.86□□□□□ -0.19
MMP28Q9H239 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 AC092865.5-201ENST00000545435 363 ntBASIC13.86□□□□□ -0.19
MMP28Q9H239 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC13.86□□□□□ -0.19
MMP28Q9H239 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC13.86□□□□□ -0.19
MMP28Q9H239 AC008667.4-201ENST00000607370 168 ntBASIC13.86□□□□□ -0.19
MMP28Q9H239 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC13.86□□□□□ -0.19
MMP28Q9H239 HADH-212ENST00000638621 741 ntTSL 5 BASIC13.86□□□□□ -0.19
MMP28Q9H239 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC13.86□□□□□ -0.19
MMP28Q9H239 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
MMP28Q9H239 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC13.86□□□□□ -0.19
MMP28Q9H239 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
MMP28Q9H239 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
MMP28Q9H239 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MMP28Q9H239 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
MMP28Q9H239 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
MMP28Q9H239 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
MMP28Q9H239 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC13.85□□□□□ -0.19
MMP28Q9H239 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC13.85□□□□□ -0.19
MMP28Q9H239 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MMP28Q9H239 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms