Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP28Q96RU2 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.83■□□□□ 0.44
USP28Q96RU2 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.83■□□□□ 0.44
USP28Q96RU2 AL512361.1-201ENST00000554200 418 ntBASIC17.83■□□□□ 0.44
USP28Q96RU2 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.83■□□□□ 0.44
USP28Q96RU2 LINC01115-203ENST00000606068 577 ntBASIC17.83■□□□□ 0.44
USP28Q96RU2 SPDYE12P-201ENST00000618416 771 ntBASIC17.83■□□□□ 0.44
USP28Q96RU2 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP28Q96RU2 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17.83■□□□□ 0.44
USP28Q96RU2 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
USP28Q96RU2 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP28Q96RU2 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP28Q96RU2 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP28Q96RU2 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP28Q96RU2 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP28Q96RU2 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
USP28Q96RU2 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.82■□□□□ 0.44
USP28Q96RU2 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
USP28Q96RU2 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
USP28Q96RU2 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
USP28Q96RU2 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 AL139400.1-201ENST00000366220 510 ntBASIC17.82■□□□□ 0.44
USP28Q96RU2 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 RPL13P2-201ENST00000440687 659 ntBASIC17.82■□□□□ 0.44
USP28Q96RU2 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.82■□□□□ 0.44
USP28Q96RU2 UBL5-208ENST00000593087 320 ntTSL 3 BASIC17.82■□□□□ 0.44
USP28Q96RU2 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.82■□□□□ 0.44
USP28Q96RU2 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.82■□□□□ 0.44
USP28Q96RU2 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
USP28Q96RU2 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC17.82■□□□□ 0.44
USP28Q96RU2 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP28Q96RU2 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC17.82■□□□□ 0.44
USP28Q96RU2 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.81■□□□□ 0.44
USP28Q96RU2 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
USP28Q96RU2 REXO1L2P-201ENST00000425429 2069 ntBASIC17.81■□□□□ 0.44
USP28Q96RU2 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.81■□□□□ 0.44
USP28Q96RU2 WASH3P-207ENST00000560956 1394 ntBASIC17.81■□□□□ 0.44
USP28Q96RU2 FO538757.1-201ENST00000623083 1397 ntBASIC17.81■□□□□ 0.44
USP28Q96RU2 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.81■□□□□ 0.44
USP28Q96RU2 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.81■□□□□ 0.44
USP28Q96RU2 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
USP28Q96RU2 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.81■□□□□ 0.44
USP28Q96RU2 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
USP28Q96RU2 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.81■□□□□ 0.44
USP28Q96RU2 GHSR-202ENST00000427970 912 ntBASIC17.81■□□□□ 0.44
USP28Q96RU2 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.81■□□□□ 0.44
USP28Q96RU2 HLA-J-203ENST00000494367 1087 ntBASIC17.81■□□□□ 0.44
USP28Q96RU2 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.81■□□□□ 0.44
USP28Q96RU2 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.81■□□□□ 0.44
USP28Q96RU2 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.81■□□□□ 0.44
USP28Q96RU2 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.81■□□□□ 0.44
USP28Q96RU2 AL596442.2-201ENST00000610240 980 ntBASIC17.81■□□□□ 0.44
USP28Q96RU2 TEX28P1-201ENST00000613479 1221 ntBASIC17.81■□□□□ 0.44
USP28Q96RU2 TEX28P2-201ENST00000617764 1221 ntBASIC17.81■□□□□ 0.44
USP28Q96RU2 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.81■□□□□ 0.44
USP28Q96RU2 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.81■□□□□ 0.44
USP28Q96RU2 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
USP28Q96RU2 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 SNX18-202ENST00000343017 3140 ntBASIC17.81■□□□□ 0.44
USP28Q96RU2 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC17.81■□□□□ 0.44
USP28Q96RU2 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
USP28Q96RU2 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC17.81■□□□□ 0.44
USP28Q96RU2 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 AC007292.2-201ENST00000593524 1812 ntBASIC17.81■□□□□ 0.44
USP28Q96RU2 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC17.81■□□□□ 0.44
USP28Q96RU2 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 249.2 ms