Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
ERCC4Q92889 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC17.75■□□□□ 0.43
ERCC4Q92889 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 CICP11-201ENST00000434745 2827 ntBASIC17.75■□□□□ 0.43
ERCC4Q92889 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.75■□□□□ 0.43
ERCC4Q92889 HLA-H-201ENST00000383620 1096 ntBASIC17.75■□□□□ 0.43
ERCC4Q92889 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.75■□□□□ 0.43
ERCC4Q92889 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.75■□□□□ 0.43
ERCC4Q92889 AL139010.1-201ENST00000454878 894 ntBASIC17.75■□□□□ 0.43
ERCC4Q92889 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.75■□□□□ 0.43
ERCC4Q92889 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.75■□□□□ 0.43
ERCC4Q92889 IGHV3-62-201ENST00000520057 340 ntBASIC17.75■□□□□ 0.43
ERCC4Q92889 FAM86C2P-203ENST00000528684 1004 ntBASIC17.75■□□□□ 0.43
ERCC4Q92889 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.75■□□□□ 0.43
ERCC4Q92889 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.75■□□□□ 0.43
ERCC4Q92889 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.75■□□□□ 0.43
ERCC4Q92889 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.75■□□□□ 0.43
ERCC4Q92889 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.75■□□□□ 0.43
ERCC4Q92889 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC17.75■□□□□ 0.43
ERCC4Q92889 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.75■□□□□ 0.43
ERCC4Q92889 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
ERCC4Q92889 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ERCC4Q92889 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
ERCC4Q92889 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ERCC4Q92889 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ERCC4Q92889 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
ERCC4Q92889 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
ERCC4Q92889 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.74■□□□□ 0.43
ERCC4Q92889 AJ011931.1-201ENST00000618749 2492 ntBASIC17.74■□□□□ 0.43
ERCC4Q92889 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ERCC4Q92889 AC126365.1-201ENST00000578585 1514 ntBASIC17.74■□□□□ 0.43
ERCC4Q92889 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC17.74■□□□□ 0.43
ERCC4Q92889 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ERCC4Q92889 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.74■□□□□ 0.43
ERCC4Q92889 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC17.74■□□□□ 0.43
ERCC4Q92889 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ERCC4Q92889 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ERCC4Q92889 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ERCC4Q92889 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ERCC4Q92889 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.74■□□□□ 0.43
ERCC4Q92889 MCCD1P2-201ENST00000423228 335 ntBASIC17.74■□□□□ 0.43
ERCC4Q92889 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.74■□□□□ 0.43
ERCC4Q92889 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.74■□□□□ 0.43
ERCC4Q92889 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.74■□□□□ 0.43
ERCC4Q92889 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.74■□□□□ 0.43
ERCC4Q92889 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ERCC4Q92889 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
ERCC4Q92889 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
ERCC4Q92889 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ERCC4Q92889 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ERCC4Q92889 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
ERCC4Q92889 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ERCC4Q92889 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.74■□□□□ 0.43
ERCC4Q92889 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ERCC4Q92889 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ERCC4Q92889 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
ERCC4Q92889 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ERCC4Q92889 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.73■□□□□ 0.43
ERCC4Q92889 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.73■□□□□ 0.43
ERCC4Q92889 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ERCC4Q92889 FAM45BP-202ENST00000592932 1624 ntBASIC17.73■□□□□ 0.43
ERCC4Q92889 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ERCC4Q92889 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ERCC4Q92889 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ERCC4Q92889 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC17.73■□□□□ 0.43
ERCC4Q92889 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ERCC4Q92889 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ERCC4Q92889 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
ERCC4Q92889 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
ERCC4Q92889 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
ERCC4Q92889 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ERCC4Q92889 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ERCC4Q92889 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ERCC4Q92889 AL592309.1-201ENST00000443127 649 ntBASIC17.73■□□□□ 0.43
ERCC4Q92889 EEF1DP4-201ENST00000446006 880 ntBASIC17.73■□□□□ 0.43
ERCC4Q92889 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.73■□□□□ 0.43
ERCC4Q92889 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.73■□□□□ 0.43
ERCC4Q92889 BANF1P1-201ENST00000553684 263 ntBASIC17.73■□□□□ 0.43
ERCC4Q92889 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.73■□□□□ 0.43
ERCC4Q92889 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ERCC4Q92889 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.73■□□□□ 0.43
ERCC4Q92889 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
ERCC4Q92889 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.73■□□□□ 0.43
ERCC4Q92889 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
ERCC4Q92889 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.73■□□□□ 0.43
ERCC4Q92889 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.73■□□□□ 0.43
ERCC4Q92889 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms