Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
GFRA1P56159 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.9□□□□□ -0.18
GFRA1P56159 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC13.9□□□□□ -0.18
GFRA1P56159 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC13.9□□□□□ -0.18
GFRA1P56159 AL596257.1-201ENST00000641463 2694 ntBASIC13.9□□□□□ -0.18
GFRA1P56159 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
GFRA1P56159 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
GFRA1P56159 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.9□□□□□ -0.18
GFRA1P56159 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 MGST3-203ENST00000367885 680 ntTSL 2 BASIC13.9□□□□□ -0.18
GFRA1P56159 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
GFRA1P56159 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC13.9□□□□□ -0.18
GFRA1P56159 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC13.9□□□□□ -0.18
GFRA1P56159 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 ARSEP1-201ENST00000420443 635 ntBASIC13.9□□□□□ -0.18
GFRA1P56159 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC13.9□□□□□ -0.18
GFRA1P56159 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC13.9□□□□□ -0.18
GFRA1P56159 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 ACA64.2-201ENST00000459014 129 ntBASIC13.9□□□□□ -0.18
GFRA1P56159 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC13.9□□□□□ -0.18
GFRA1P56159 AP001889.1-201ENST00000525414 633 ntBASIC13.9□□□□□ -0.18
GFRA1P56159 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC13.9□□□□□ -0.18
GFRA1P56159 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC13.9□□□□□ -0.18
GFRA1P56159 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.9□□□□□ -0.18
GFRA1P56159 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.9□□□□□ -0.18
GFRA1P56159 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
GFRA1P56159 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.9□□□□□ -0.18
GFRA1P56159 BX539320.1-201ENST00000623759 877 ntBASIC13.9□□□□□ -0.18
GFRA1P56159 AC018665.1-201ENST00000622927 1362 ntBASIC13.9□□□□□ -0.18
GFRA1P56159 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC13.9□□□□□ -0.18
GFRA1P56159 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.9□□□□□ -0.18
GFRA1P56159 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.9□□□□□ -0.18
GFRA1P56159 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
GFRA1P56159 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
GFRA1P56159 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.9□□□□□ -0.18
GFRA1P56159 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC13.9□□□□□ -0.18
GFRA1P56159 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.9□□□□□ -0.18
GFRA1P56159 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13.9□□□□□ -0.18
GFRA1P56159 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
GFRA1P56159 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.9□□□□□ -0.19
GFRA1P56159 AC093525.8-201ENST00000624099 1342 ntBASIC13.9□□□□□ -0.19
GFRA1P56159 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
GFRA1P56159 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
GFRA1P56159 FLJ16779-201ENST00000612722 7638 ntBASIC13.89□□□□□ -0.19
GFRA1P56159 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
GFRA1P56159 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
GFRA1P56159 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC13.89□□□□□ -0.19
GFRA1P56159 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
GFRA1P56159 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
GFRA1P56159 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
GFRA1P56159 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC13.89□□□□□ -0.19
GFRA1P56159 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
GFRA1P56159 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
GFRA1P56159 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.89□□□□□ -0.19
GFRA1P56159 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
GFRA1P56159 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.89□□□□□ -0.19
GFRA1P56159 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
GFRA1P56159 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
GFRA1P56159 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.89□□□□□ -0.19
GFRA1P56159 HIST1H2BPS3-201ENST00000419683 341 ntBASIC13.89□□□□□ -0.19
GFRA1P56159 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.89□□□□□ -0.19
GFRA1P56159 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC13.89□□□□□ -0.19
GFRA1P56159 HILS1-202ENST00000545329 423 ntBASIC13.89□□□□□ -0.19
GFRA1P56159 NOP2-220ENST00000545915 630 ntTSL 2 BASIC13.89□□□□□ -0.19
GFRA1P56159 RAB43P1-201ENST00000561790 589 ntBASIC13.89□□□□□ -0.19
GFRA1P56159 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC13.89□□□□□ -0.19
GFRA1P56159 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.89□□□□□ -0.19
GFRA1P56159 KSR1-207ENST00000578981 748 ntTSL 4 BASIC13.89□□□□□ -0.19
GFRA1P56159 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC13.89□□□□□ -0.19
GFRA1P56159 AL512343.1-201ENST00000605837 169 ntBASIC13.89□□□□□ -0.19
GFRA1P56159 AL022328.1-201ENST00000610050 478 ntBASIC13.89□□□□□ -0.19
GFRA1P56159 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.89□□□□□ -0.19
GFRA1P56159 AP005019.2-201ENST00000615104 511 ntBASIC13.89□□□□□ -0.19
GFRA1P56159 HADH-212ENST00000638621 741 ntTSL 5 BASIC13.89□□□□□ -0.19
GFRA1P56159 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC13.89□□□□□ -0.19
GFRA1P56159 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
GFRA1P56159 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
GFRA1P56159 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
GFRA1P56159 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
GFRA1P56159 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
GFRA1P56159 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms