Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.73■□□□□ 0.27
VCPP55072 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.73■□□□□ 0.27
VCPP55072 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.73■□□□□ 0.27
VCPP55072 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.73■□□□□ 0.27
VCPP55072 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.73■□□□□ 0.27
VCPP55072 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.73■□□□□ 0.27
VCPP55072 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC16.73■□□□□ 0.27
VCPP55072 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
VCPP55072 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.73■□□□□ 0.27
VCPP55072 AC093726.1-201ENST00000608064 963 ntBASIC16.73■□□□□ 0.27
VCPP55072 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VCPP55072 PPA1-206ENST00000625364 644 ntTSL 5 BASIC16.73■□□□□ 0.27
VCPP55072 AC004461.2-201ENST00000629517 803 ntBASIC16.73■□□□□ 0.27
VCPP55072 AL033527.5-201ENST00000641382 801 ntBASIC16.73■□□□□ 0.27
VCPP55072 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCPP55072 PDIA3P1-201ENST00000471856 1510 ntBASIC16.73■□□□□ 0.27
VCPP55072 AP003680.1-201ENST00000598970 3660 ntBASIC16.73■□□□□ 0.27
VCPP55072 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCPP55072 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.73■□□□□ 0.27
VCPP55072 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.73■□□□□ 0.27
VCPP55072 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCPP55072 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
VCPP55072 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCPP55072 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.73■□□□□ 0.27
VCPP55072 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.73■□□□□ 0.27
VCPP55072 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCPP55072 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
VCPP55072 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VCPP55072 AC013268.4-201ENST00000637413 2228 ntBASIC16.73■□□□□ 0.27
VCPP55072 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.73■□□□□ 0.27
VCPP55072 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.72■□□□□ 0.27
VCPP55072 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
VCPP55072 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCPP55072 AC011477.6-201ENST00000604980 1927 ntBASIC16.72■□□□□ 0.27
VCPP55072 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCPP55072 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.72■□□□□ 0.27
VCPP55072 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCPP55072 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.72■□□□□ 0.27
VCPP55072 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.72■□□□□ 0.27
VCPP55072 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCPP55072 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.72■□□□□ 0.27
VCPP55072 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.72■□□□□ 0.27
VCPP55072 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VCPP55072 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCPP55072 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
VCPP55072 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.72■□□□□ 0.27
VCPP55072 AC005229.1-201ENST00000392885 409 ntBASIC16.72■□□□□ 0.27
VCPP55072 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
VCPP55072 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC16.72■□□□□ 0.27
VCPP55072 MEP1AP4-201ENST00000423244 1087 ntBASIC16.72■□□□□ 0.27
VCPP55072 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.72■□□□□ 0.27
VCPP55072 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
VCPP55072 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.72■□□□□ 0.27
VCPP55072 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
VCPP55072 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC16.72■□□□□ 0.27
VCPP55072 MIR4321-201ENST00000592276 80 ntBASIC16.72■□□□□ 0.27
VCPP55072 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCPP55072 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCPP55072 AC018665.1-201ENST00000622927 1362 ntBASIC16.72■□□□□ 0.27
VCPP55072 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCPP55072 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCPP55072 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VCPP55072 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
VCPP55072 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCPP55072 AC144831.1-201ENST00000573312 2656 ntBASIC16.72■□□□□ 0.27
VCPP55072 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.72■□□□□ 0.27
VCPP55072 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCPP55072 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.71■□□□□ 0.27
VCPP55072 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCPP55072 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCPP55072 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
VCPP55072 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.71■□□□□ 0.27
VCPP55072 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.71■□□□□ 0.27
VCPP55072 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.71■□□□□ 0.27
VCPP55072 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCPP55072 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCPP55072 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCPP55072 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCPP55072 PPT1-215ENST00000641471 2368 ntBASIC16.71■□□□□ 0.27
VCPP55072 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCPP55072 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.71■□□□□ 0.27
VCPP55072 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.71■□□□□ 0.27
VCPP55072 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCPP55072 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCPP55072 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
VCPP55072 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.71■□□□□ 0.27
VCPP55072 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.71■□□□□ 0.27
VCPP55072 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.71■□□□□ 0.27
VCPP55072 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCPP55072 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.71■□□□□ 0.27
VCPP55072 USP32P1-208ENST00000506594 1164 ntBASIC16.71■□□□□ 0.27
VCPP55072 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.71■□□□□ 0.27
VCPP55072 AC010319.3-201ENST00000597028 470 ntBASIC16.71■□□□□ 0.27
VCPP55072 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC16.71■□□□□ 0.27
VCPP55072 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCPP55072 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.71■□□□□ 0.27
VCPP55072 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCPP55072 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.71■□□□□ 0.27
VCPP55072 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.71■□□□□ 0.27
VCPP55072 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms