Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 AC138951.2-201ENST00000623455 1161 ntBASIC16.2■□□□□ 0.18
EPHB3P54753 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.2■□□□□ 0.18
EPHB3P54753 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.2■□□□□ 0.18
EPHB3P54753 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC16.2■□□□□ 0.18
EPHB3P54753 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
EPHB3P54753 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.2■□□□□ 0.18
EPHB3P54753 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.2■□□□□ 0.18
EPHB3P54753 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
EPHB3P54753 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.2■□□□□ 0.18
EPHB3P54753 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.2■□□□□ 0.18
EPHB3P54753 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
EPHB3P54753 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
EPHB3P54753 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC16.19■□□□□ 0.18
EPHB3P54753 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.19■□□□□ 0.18
EPHB3P54753 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.19■□□□□ 0.18
EPHB3P54753 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
EPHB3P54753 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
EPHB3P54753 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
EPHB3P54753 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
EPHB3P54753 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
EPHB3P54753 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
EPHB3P54753 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.19■□□□□ 0.18
EPHB3P54753 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
EPHB3P54753 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.19■□□□□ 0.18
EPHB3P54753 AL138709.1-201ENST00000614840 1693 ntBASIC16.19■□□□□ 0.18
EPHB3P54753 AC084364.1-201ENST00000551967 1556 ntBASIC16.19■□□□□ 0.18
EPHB3P54753 AC006001.1-201ENST00000325130 474 ntBASIC16.19■□□□□ 0.18
EPHB3P54753 RNU1-114P-201ENST00000365297 166 ntBASIC16.19■□□□□ 0.18
EPHB3P54753 TPO-206ENST00000382269 1155 ntTSL 5 BASIC16.19■□□□□ 0.18
EPHB3P54753 ACTBP8-201ENST00000403258 1108 ntBASIC16.19■□□□□ 0.18
EPHB3P54753 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.19■□□□□ 0.18
EPHB3P54753 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC16.19■□□□□ 0.18
EPHB3P54753 PFN1P12-201ENST00000455938 534 ntBASIC16.19■□□□□ 0.18
EPHB3P54753 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
EPHB3P54753 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.19■□□□□ 0.18
EPHB3P54753 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.19■□□□□ 0.18
EPHB3P54753 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.19■□□□□ 0.18
EPHB3P54753 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.19■□□□□ 0.18
EPHB3P54753 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.19■□□□□ 0.18
EPHB3P54753 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.19■□□□□ 0.18
EPHB3P54753 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 AC127383.1-201ENST00000444697 1800 ntBASIC16.19■□□□□ 0.18
EPHB3P54753 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
EPHB3P54753 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
EPHB3P54753 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
EPHB3P54753 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC16.19■□□□□ 0.18
EPHB3P54753 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
EPHB3P54753 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
EPHB3P54753 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
EPHB3P54753 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC16.18■□□□□ 0.18
EPHB3P54753 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC16.18■□□□□ 0.18
EPHB3P54753 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.18■□□□□ 0.18
EPHB3P54753 RNA5SP486-201ENST00000515961 83 ntBASIC16.18■□□□□ 0.18
EPHB3P54753 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
EPHB3P54753 AC078819.1-201ENST00000547454 765 ntBASIC16.18■□□□□ 0.18
EPHB3P54753 AC012085.1-201ENST00000548270 765 ntBASIC16.18■□□□□ 0.18
EPHB3P54753 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC16.18■□□□□ 0.18
EPHB3P54753 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC16.18■□□□□ 0.18
EPHB3P54753 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC16.18■□□□□ 0.18
EPHB3P54753 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC16.18■□□□□ 0.18
EPHB3P54753 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.18■□□□□ 0.18
EPHB3P54753 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.18■□□□□ 0.18
EPHB3P54753 AC009542.2-202ENST00000619004 1067 ntBASIC16.18■□□□□ 0.18
EPHB3P54753 MIR6869-201ENST00000619434 62 ntBASIC16.18■□□□□ 0.18
EPHB3P54753 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
EPHB3P54753 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms