Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LIMK1P53667 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
LIMK1P53667 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LIMK1P53667 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.37■□□□□ 0.05
LIMK1P53667 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LIMK1P53667 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LIMK1P53667 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LIMK1P53667 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LIMK1P53667 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.37■□□□□ 0.05
LIMK1P53667 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC15.37■□□□□ 0.05
LIMK1P53667 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC15.37■□□□□ 0.05
LIMK1P53667 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC15.37■□□□□ 0.05
LIMK1P53667 AC092978.1-202ENST00000637590 1327 ntBASIC15.37■□□□□ 0.05
LIMK1P53667 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LIMK1P53667 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
LIMK1P53667 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LIMK1P53667 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
LIMK1P53667 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LIMK1P53667 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC15.37■□□□□ 0.05
LIMK1P53667 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LIMK1P53667 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
LIMK1P53667 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
LIMK1P53667 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
LIMK1P53667 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
LIMK1P53667 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.36■□□□□ 0.05
LIMK1P53667 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.36■□□□□ 0.05
LIMK1P53667 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
LIMK1P53667 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.36■□□□□ 0.05
LIMK1P53667 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC15.36■□□□□ 0.05
LIMK1P53667 AL133466.1-201ENST00000447582 150 ntBASIC15.36■□□□□ 0.05
LIMK1P53667 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 SLED1-202ENST00000512051 380 ntBASIC15.36■□□□□ 0.05
LIMK1P53667 AC245884.6-201ENST00000515672 1067 ntBASIC15.36■□□□□ 0.05
LIMK1P53667 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.36■□□□□ 0.05
LIMK1P53667 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.36■□□□□ 0.05
LIMK1P53667 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.36■□□□□ 0.05
LIMK1P53667 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.36■□□□□ 0.05
LIMK1P53667 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.36■□□□□ 0.05
LIMK1P53667 KLK3-207ENST00000595952 969 ntTSL 3 BASIC15.36■□□□□ 0.05
LIMK1P53667 AC000095.1-201ENST00000603208 874 ntBASIC15.36■□□□□ 0.05
LIMK1P53667 AC097724.1-201ENST00000609581 426 ntBASIC15.36■□□□□ 0.05
LIMK1P53667 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.36■□□□□ 0.05
LIMK1P53667 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
LIMK1P53667 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.36■□□□□ 0.05
LIMK1P53667 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.36■□□□□ 0.05
LIMK1P53667 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.36■□□□□ 0.05
LIMK1P53667 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.36■□□□□ 0.05
LIMK1P53667 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LIMK1P53667 AL031731.1-201ENST00000642131 2094 ntBASIC15.36■□□□□ 0.05
LIMK1P53667 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.35■□□□□ 0.05
LIMK1P53667 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
LIMK1P53667 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
LIMK1P53667 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.35■□□□□ 0.05
LIMK1P53667 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.35■□□□□ 0.05
LIMK1P53667 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
LIMK1P53667 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.35■□□□□ 0.05
LIMK1P53667 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.35■□□□□ 0.05
LIMK1P53667 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.35■□□□□ 0.05
LIMK1P53667 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 MIR769-201ENST00000390225 118 ntBASIC15.35■□□□□ 0.05
LIMK1P53667 MPV17-204ENST00000399052 749 ntTSL 4 BASIC15.35■□□□□ 0.05
LIMK1P53667 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
LIMK1P53667 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC15.35■□□□□ 0.05
LIMK1P53667 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LIMK1P53667 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC15.35■□□□□ 0.05
LIMK1P53667 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC15.35■□□□□ 0.05
LIMK1P53667 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC15.35■□□□□ 0.05
LIMK1P53667 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.35■□□□□ 0.05
LIMK1P53667 AC243562.2-201ENST00000561247 970 ntBASIC15.35■□□□□ 0.05
LIMK1P53667 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.35■□□□□ 0.05
LIMK1P53667 CYGB-203ENST00000589145 788 ntTSL 3 BASIC15.35■□□□□ 0.05
LIMK1P53667 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
LIMK1P53667 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms