Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 KRT18P66-201ENST00000452970 1269 ntBASIC16.29■□□□□ 0.2
COL4A4P53420 RN7SL8P-201ENST00000461771 266 ntBASIC16.29■□□□□ 0.2
COL4A4P53420 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC16.29■□□□□ 0.2
COL4A4P53420 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC16.29■□□□□ 0.2
COL4A4P53420 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 AL160314.3-201ENST00000556041 767 ntBASIC16.29■□□□□ 0.2
COL4A4P53420 CSH2-206ENST00000560142 749 ntTSL 5 BASIC16.29■□□□□ 0.2
COL4A4P53420 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC16.29■□□□□ 0.2
COL4A4P53420 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16.29■□□□□ 0.2
COL4A4P53420 AC100757.4-201ENST00000626934 759 ntBASIC16.29■□□□□ 0.2
COL4A4P53420 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.29■□□□□ 0.2
COL4A4P53420 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COL4A4P53420 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.29■□□□□ 0.2
COL4A4P53420 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL4A4P53420 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.28■□□□□ 0.2
COL4A4P53420 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.28■□□□□ 0.2
COL4A4P53420 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC16.28■□□□□ 0.2
COL4A4P53420 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC16.28■□□□□ 0.2
COL4A4P53420 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC16.28■□□□□ 0.2
COL4A4P53420 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.28■□□□□ 0.2
COL4A4P53420 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 AC112693.3-201ENST00000624819 1983 ntBASIC16.28■□□□□ 0.2
COL4A4P53420 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.28■□□□□ 0.2
COL4A4P53420 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.28■□□□□ 0.2
COL4A4P53420 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.28■□□□□ 0.2
COL4A4P53420 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 KRT8P4-201ENST00000509735 1454 ntBASIC16.28■□□□□ 0.2
COL4A4P53420 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.28■□□□□ 0.2
COL4A4P53420 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.28■□□□□ 0.2
COL4A4P53420 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.28■□□□□ 0.2
COL4A4P53420 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL4A4P53420 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.27■□□□□ 0.2
COL4A4P53420 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL4A4P53420 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL4A4P53420 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
COL4A4P53420 AL008707.1-201ENST00000422498 534 ntBASIC16.27■□□□□ 0.2
COL4A4P53420 AC011742.3-201ENST00000439053 820 ntBASIC16.27■□□□□ 0.2
COL4A4P53420 AC012618.1-201ENST00000461223 412 ntBASIC16.27■□□□□ 0.2
COL4A4P53420 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL4A4P53420 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC16.27■□□□□ 0.2
COL4A4P53420 COX6A1P2-201ENST00000620597 330 ntBASIC16.27■□□□□ 0.2
COL4A4P53420 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.27■□□□□ 0.2
COL4A4P53420 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.27■□□□□ 0.2
COL4A4P53420 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
COL4A4P53420 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL4A4P53420 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL4A4P53420 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
COL4A4P53420 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.27■□□□□ 0.2
COL4A4P53420 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL4A4P53420 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.27■□□□□ 0.2
COL4A4P53420 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL4A4P53420 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL4A4P53420 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.27■□□□□ 0.2
COL4A4P53420 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL4A4P53420 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL4A4P53420 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL4A4P53420 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.27■□□□□ 0.2
COL4A4P53420 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.27■□□□□ 0.2
COL4A4P53420 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.27■□□□□ 0.2
COL4A4P53420 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL4A4P53420 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.2
COL4A4P53420 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL4A4P53420 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.27■□□□□ 0.2
COL4A4P53420 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL4A4P53420 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL4A4P53420 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.27■□□□□ 0.19
COL4A4P53420 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL4A4P53420 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL4A4P53420 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL4A4P53420 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL4A4P53420 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL4A4P53420 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL4A4P53420 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
COL4A4P53420 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL4A4P53420 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC16.27■□□□□ 0.19
COL4A4P53420 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC16.27■□□□□ 0.19
COL4A4P53420 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
COL4A4P53420 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC16.27■□□□□ 0.19
COL4A4P53420 LY6E-208ENST00000520531 490 ntTSL 2 BASIC16.27■□□□□ 0.19
COL4A4P53420 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.19
COL4A4P53420 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC16.27■□□□□ 0.19
COL4A4P53420 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC16.27■□□□□ 0.19
COL4A4P53420 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms