Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC18.37■□□□□ 0.53
BRCA1P38398 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC18.37■□□□□ 0.53
BRCA1P38398 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
BRCA1P38398 AC006158.1-201ENST00000610661 249 ntBASIC18.37■□□□□ 0.53
BRCA1P38398 AC148477.9-201ENST00000623974 539 ntBASIC18.37■□□□□ 0.53
BRCA1P38398 AC009145.4-201ENST00000625119 1294 ntBASIC18.37■□□□□ 0.53
BRCA1P38398 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BRCA1P38398 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.37■□□□□ 0.53
BRCA1P38398 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
BRCA1P38398 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
BRCA1P38398 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
BRCA1P38398 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC18.36■□□□□ 0.53
BRCA1P38398 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
BRCA1P38398 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
BRCA1P38398 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
BRCA1P38398 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
BRCA1P38398 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
BRCA1P38398 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
BRCA1P38398 ACTBP7-201ENST00000418351 1124 ntBASIC18.36■□□□□ 0.53
BRCA1P38398 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC18.36■□□□□ 0.53
BRCA1P38398 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC18.36■□□□□ 0.53
BRCA1P38398 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC18.36■□□□□ 0.53
BRCA1P38398 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC18.36■□□□□ 0.53
BRCA1P38398 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC18.36■□□□□ 0.53
BRCA1P38398 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC18.36■□□□□ 0.53
BRCA1P38398 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
BRCA1P38398 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
BRCA1P38398 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC18.36■□□□□ 0.53
BRCA1P38398 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC18.36■□□□□ 0.53
BRCA1P38398 AL022334.2-201ENST00000610000 484 ntBASIC18.36■□□□□ 0.53
BRCA1P38398 MIR6720-201ENST00000611664 98 ntBASIC18.36■□□□□ 0.53
BRCA1P38398 AC073592.2-201ENST00000623062 780 ntBASIC18.36■□□□□ 0.53
BRCA1P38398 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.36■□□□□ 0.53
BRCA1P38398 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
BRCA1P38398 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
BRCA1P38398 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.36■□□□□ 0.53
BRCA1P38398 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.36■□□□□ 0.53
BRCA1P38398 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
BRCA1P38398 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC18.36■□□□□ 0.53
BRCA1P38398 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
BRCA1P38398 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.36■□□□□ 0.53
BRCA1P38398 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.36■□□□□ 0.53
BRCA1P38398 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
BRCA1P38398 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.35■□□□□ 0.53
BRCA1P38398 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC18.35■□□□□ 0.53
BRCA1P38398 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC18.35■□□□□ 0.53
BRCA1P38398 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 STK16-203ENST00000409516 895 ntTSL 2 BASIC18.35■□□□□ 0.53
BRCA1P38398 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 CR383656.3-201ENST00000551315 183 ntBASIC18.35■□□□□ 0.53
BRCA1P38398 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC18.35■□□□□ 0.53
BRCA1P38398 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
BRCA1P38398 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC18.35■□□□□ 0.53
BRCA1P38398 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
BRCA1P38398 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC18.35■□□□□ 0.53
BRCA1P38398 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
BRCA1P38398 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
BRCA1P38398 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
BRCA1P38398 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC18.35■□□□□ 0.53
BRCA1P38398 AC092638.2-201ENST00000441105 947 ntBASIC18.35■□□□□ 0.53
BRCA1P38398 OR2R1P-201ENST00000441404 914 ntBASIC18.35■□□□□ 0.53
BRCA1P38398 RPSAP15-201ENST00000448168 861 ntBASIC18.35■□□□□ 0.53
BRCA1P38398 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC18.35■□□□□ 0.53
BRCA1P38398 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC18.35■□□□□ 0.53
BRCA1P38398 AC026434.2-201ENST00000506094 1078 ntBASIC18.35■□□□□ 0.53
BRCA1P38398 AC012158.2-201ENST00000536546 354 ntBASIC18.35■□□□□ 0.53
BRCA1P38398 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
BRCA1P38398 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC18.35■□□□□ 0.53
BRCA1P38398 AC133540.1-201ENST00000620845 1019 ntBASIC18.35■□□□□ 0.53
BRCA1P38398 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
BRCA1P38398 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
BRCA1P38398 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
BRCA1P38398 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
BRCA1P38398 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.34■□□□□ 0.53
BRCA1P38398 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.34■□□□□ 0.53
BRCA1P38398 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
BRCA1P38398 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
BRCA1P38398 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms