Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.75■□□□□ 0.11
PTPN4P29074 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.75■□□□□ 0.11
PTPN4P29074 GREM1-201ENST00000560677 623 ntTSL 4 BASIC15.75■□□□□ 0.11
PTPN4P29074 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.75■□□□□ 0.11
PTPN4P29074 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.75■□□□□ 0.11
PTPN4P29074 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN4P29074 AL390955.2-201ENST00000603032 514 ntBASIC15.75■□□□□ 0.11
PTPN4P29074 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN4P29074 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.75■□□□□ 0.11
PTPN4P29074 AC084121.4-201ENST00000641598 221 ntBASIC15.75■□□□□ 0.11
PTPN4P29074 AF228730.8-201ENST00000642140 221 ntBASIC15.75■□□□□ 0.11
PTPN4P29074 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
PTPN4P29074 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.75■□□□□ 0.11
PTPN4P29074 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN4P29074 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN4P29074 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.75■□□□□ 0.11
PTPN4P29074 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN4P29074 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
PTPN4P29074 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
PTPN4P29074 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN4P29074 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN4P29074 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN4P29074 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
PTPN4P29074 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.74■□□□□ 0.11
PTPN4P29074 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.74■□□□□ 0.11
PTPN4P29074 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.74■□□□□ 0.11
PTPN4P29074 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.74■□□□□ 0.11
PTPN4P29074 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.74■□□□□ 0.11
PTPN4P29074 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
PTPN4P29074 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.74■□□□□ 0.11
PTPN4P29074 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
PTPN4P29074 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.74■□□□□ 0.11
PTPN4P29074 AL035633.1-201ENST00000406139 838 ntBASIC15.74■□□□□ 0.11
PTPN4P29074 SPDYE7P-202ENST00000420373 878 ntBASIC15.74■□□□□ 0.11
PTPN4P29074 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.74■□□□□ 0.11
PTPN4P29074 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.74■□□□□ 0.11
PTPN4P29074 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.74■□□□□ 0.11
PTPN4P29074 AC026150.2-201ENST00000564693 1156 ntBASIC15.74■□□□□ 0.11
PTPN4P29074 MIR4745-201ENST00000577608 62 ntBASIC15.74■□□□□ 0.11
PTPN4P29074 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
PTPN4P29074 CYP2A7P1-201ENST00000595391 815 ntBASIC15.74■□□□□ 0.11
PTPN4P29074 AJ011932.1-201ENST00000621707 465 ntBASIC15.74■□□□□ 0.11
PTPN4P29074 AC008267.7-201ENST00000624570 1194 ntBASIC15.74■□□□□ 0.11
PTPN4P29074 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
PTPN4P29074 AC041040.2-201ENST00000622926 2899 ntBASIC15.74■□□□□ 0.11
PTPN4P29074 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
PTPN4P29074 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.74■□□□□ 0.11
PTPN4P29074 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.74■□□□□ 0.11
PTPN4P29074 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
PTPN4P29074 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.74■□□□□ 0.11
PTPN4P29074 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
PTPN4P29074 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN4P29074 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.74■□□□□ 0.11
PTPN4P29074 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
PTPN4P29074 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
PTPN4P29074 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PTPN4P29074 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PTPN4P29074 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.73■□□□□ 0.11
PTPN4P29074 AL365209.1-201ENST00000624418 6473 ntBASIC15.73■□□□□ 0.11
PTPN4P29074 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.73■□□□□ 0.11
PTPN4P29074 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.73■□□□□ 0.11
PTPN4P29074 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.73■□□□□ 0.11
PTPN4P29074 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
PTPN4P29074 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.73■□□□□ 0.11
PTPN4P29074 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.73■□□□□ 0.11
PTPN4P29074 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 MIR943-201ENST00000401286 94 ntBASIC15.73■□□□□ 0.11
PTPN4P29074 AC107890.1-201ENST00000422478 521 ntBASIC15.73■□□□□ 0.11
PTPN4P29074 BASP1P1-201ENST00000430708 665 ntBASIC15.73■□□□□ 0.11
PTPN4P29074 AC055876.3-201ENST00000431496 288 ntBASIC15.73■□□□□ 0.11
PTPN4P29074 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.73■□□□□ 0.11
PTPN4P29074 AC125807.1-201ENST00000483097 614 ntBASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms