Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.31□□□□□ -0.12
MSX1P28360 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
MSX1P28360 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.31□□□□□ -0.12
MSX1P28360 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
MSX1P28360 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.31□□□□□ -0.12
MSX1P28360 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
MSX1P28360 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
MSX1P28360 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MSX1P28360 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
MSX1P28360 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
MSX1P28360 AP003680.1-201ENST00000598970 3660 ntBASIC14.3□□□□□ -0.12
MSX1P28360 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.3□□□□□ -0.12
MSX1P28360 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX1P28360 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.3□□□□□ -0.12
MSX1P28360 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX1P28360 AC020658.6-201ENST00000623564 1870 ntBASIC14.3□□□□□ -0.12
MSX1P28360 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.3□□□□□ -0.12
MSX1P28360 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX1P28360 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
MSX1P28360 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.3□□□□□ -0.12
MSX1P28360 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX1P28360 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.3□□□□□ -0.12
MSX1P28360 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.3□□□□□ -0.12
MSX1P28360 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
MSX1P28360 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.3□□□□□ -0.12
MSX1P28360 WASH4P-201ENST00000564273 1246 ntBASIC14.3□□□□□ -0.12
MSX1P28360 AC106886.1-201ENST00000568660 600 ntBASIC14.3□□□□□ -0.12
MSX1P28360 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.3□□□□□ -0.12
MSX1P28360 AC008494.3-201ENST00000606615 944 ntBASIC14.3□□□□□ -0.12
MSX1P28360 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
MSX1P28360 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.3□□□□□ -0.12
MSX1P28360 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.3□□□□□ -0.12
MSX1P28360 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX1P28360 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.3□□□□□ -0.12
MSX1P28360 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.3□□□□□ -0.12
MSX1P28360 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.3□□□□□ -0.12
MSX1P28360 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MSX1P28360 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
MSX1P28360 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.29□□□□□ -0.12
MSX1P28360 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
MSX1P28360 AC105250.1-201ENST00000509378 2057 ntBASIC14.29□□□□□ -0.12
MSX1P28360 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX1P28360 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
MSX1P28360 RPL5P21-201ENST00000404620 815 ntBASIC14.29□□□□□ -0.12
MSX1P28360 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX1P28360 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.29□□□□□ -0.12
MSX1P28360 ACA64.2-201ENST00000459014 129 ntBASIC14.29□□□□□ -0.12
MSX1P28360 KRT18P43-201ENST00000469825 1281 ntBASIC14.29□□□□□ -0.12
MSX1P28360 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX1P28360 AC055876.2-201ENST00000531834 546 ntBASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms