Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.04
SIX3O95343 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
SIX3O95343 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.27■□□□□ 0.04
SIX3O95343 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.27■□□□□ 0.04
SIX3O95343 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.27■□□□□ 0.04
SIX3O95343 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
SIX3O95343 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.27■□□□□ 0.04
SIX3O95343 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.27■□□□□ 0.04
SIX3O95343 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.27■□□□□ 0.04
SIX3O95343 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.27■□□□□ 0.04
SIX3O95343 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.27■□□□□ 0.04
SIX3O95343 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.27■□□□□ 0.04
SIX3O95343 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.27■□□□□ 0.04
SIX3O95343 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.27■□□□□ 0.04
SIX3O95343 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.27■□□□□ 0.04
SIX3O95343 AL589739.1-201ENST00000607720 493 ntBASIC15.27■□□□□ 0.04
SIX3O95343 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.27■□□□□ 0.04
SIX3O95343 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 AP001059.3-201ENST00000619053 235 ntBASIC15.27■□□□□ 0.04
SIX3O95343 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SIX3O95343 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.27■□□□□ 0.03
SIX3O95343 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SIX3O95343 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SIX3O95343 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SIX3O95343 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
SIX3O95343 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SIX3O95343 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SIX3O95343 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SIX3O95343 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SIX3O95343 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
SIX3O95343 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SIX3O95343 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
SIX3O95343 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.03
SIX3O95343 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.26■□□□□ 0.03
SIX3O95343 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 AJ011931.1-201ENST00000618749 2492 ntBASIC15.26■□□□□ 0.03
SIX3O95343 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SIX3O95343 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.26■□□□□ 0.03
SIX3O95343 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.26■□□□□ 0.03
SIX3O95343 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.26■□□□□ 0.03
SIX3O95343 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.26■□□□□ 0.03
SIX3O95343 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SIX3O95343 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
SIX3O95343 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
SIX3O95343 AL080243.2-201ENST00000418783 582 ntBASIC15.26■□□□□ 0.03
SIX3O95343 KRT18P64-201ENST00000434946 1219 ntBASIC15.26■□□□□ 0.03
SIX3O95343 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.26■□□□□ 0.03
SIX3O95343 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
SIX3O95343 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.26■□□□□ 0.03
SIX3O95343 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.26■□□□□ 0.03
SIX3O95343 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 AC092865.5-201ENST00000545435 363 ntBASIC15.26■□□□□ 0.03
SIX3O95343 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SIX3O95343 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.26■□□□□ 0.03
SIX3O95343 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 AC027612.4-201ENST00000605371 583 ntBASIC15.26■□□□□ 0.03
SIX3O95343 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.26■□□□□ 0.03
SIX3O95343 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.26■□□□□ 0.03
SIX3O95343 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
SIX3O95343 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.26■□□□□ 0.03
SIX3O95343 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SIX3O95343 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.26■□□□□ 0.03
SIX3O95343 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
SIX3O95343 AC013726.1-201ENST00000563747 2285 ntBASIC15.26■□□□□ 0.03
SIX3O95343 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SIX3O95343 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SIX3O95343 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
SIX3O95343 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms